CX672036

Overview
NameCX672036
Unique NameCX672036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672036_ssr699 microsatellite CX672036_ssr699:699..713. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX672036 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.324e-14
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = -2 
Query:  724 CPEPELTYGLPGHTDPNALTILLQDLEVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQVIT 906
            CP+P+   GL  H+D   LT+L+Q  +V GLQ+ KD KWV V PLPNAF++NIGD L++IT
Sbjct:  221 CPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIIT 281
[Close]
BLAST of CX672036 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.249e-13
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = -2 
Query:  724 CPEPELTYGLPGHTDPNALTILLQDLEVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQVIT 906
            CP+PEL  GL  HTD   + +L QD +V+GLQ+LKDD+W+ V P+ ++ VIN+GDQL+VIT
Sbjct:  165 CPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLEVIT 225
[Close]
BLAST of CX672036 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.131e-13
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = -2 
Query:  724 CPEPELTYGLPGHTDPNALTILLQDLEVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQVIT 906
            CP+PEL  GL  HTD   L +L QD +V+GL VLKD KWV V P+ ++ VIN+GDQL+VIT
Sbjct:  166 CPKPELIKGLRAHTDAGGLILLFQDDKVSGLHVLKDGKWVDVPPMHHSIVINLGDQLEVIT 226
[Close]
BLAST of CX672036 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.783e-13
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = -2 
Query:  724 CPEPELTYGLPGHTDPNALTILLQDLEVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQVIT 906
            CP+P+L  GL  HTD   + +L QD +V+GLQ+LKDD+W+ V P+ ++ VIN+GDQL+VIT
Sbjct:  165 CPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLEVIT 225
[Close]
BLAST of CX672036 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.635e-13
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = -2 
Query:  724 CPEPELTYGLPGHTDPNALTILLQDLEVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQVIT 906
            CP PEL  GL  HTD   + +L QD +V+GLQ+LKD +W+ V P+ ++ VINIGDQL+VIT
Sbjct:  165 CPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLLKDGEWIDVPPMKHSIVINIGDQLEVIT 225
[Close]
BLAST of CX672036 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.747e-13
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = -2 
Query:  724 CPEPELTYGLPGHTDPNALTILLQDLEVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQVIT 906
            CP+PEL  GL  HTD   + +L QD  V+GLQ+LKD++W+ V P+ ++ V+NIGDQL+VIT
Sbjct:  163 CPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGDQLEVIT 223
[Close]
BLAST of CX672036 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.200e-13
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = -2 
Query:  724 CPEPELTYGLPGHTDPNALTILLQDLEVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQVIT 906
            CP PEL  GL  HTD   L +L QD +V+GLQ+LKD +W+ V P+ ++ VIN+GDQL+VIT
Sbjct:  165 CPNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVIT 225
[Close]
BLAST of CX672036 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.097e-13
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = -2 
Query:  724 CPEPELTYGLPGHTDPNALTILLQDLEVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQVIT 906
            CP PEL  GL  HTD   L +L QD  VAGLQ+LKD +WV V P+ ++ VIN+GDQ++VIT
Sbjct:  166 CPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDGEWVDVPPMNHSIVINLGDQVEVIT 226
[Close]
BLAST of CX672036 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.097e-13
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = -2 
Query:  724 CPEPELTYGLPGHTDPNALTILLQDLEVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQVIT 906
            CP+PEL  GL  HTD   + +L QD +V+GLQ+LKD +W+ V P+ ++ V+NIGDQL+VIT
Sbjct:  169 CPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWIDVPPVRHSIVVNIGDQLEVIT 229
[Close]
BLAST of CX672036 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.097e-13
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = -2 
Query:  724 CPEPELTYGLPGHTDPNALTILLQDLEVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQVIT 906
            CP+P+LT GL  H+D + LTILLQD  + GLQVL D  WV V P+P A V+N+GD LQ+IT
Sbjct:  226 CPQPDLTLGLTKHSDNSFLTILLQD-HIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLIT 285
The following BLAST results are available for this feature:
BLAST of CX672036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SRG1_ARATH7.324e-1455.74Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
ACCO_PEA1.249e-1355.741-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]
ACCO3_CUCME2.131e-1359.021-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCO4_PETHY2.783e-1354.101-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
ACCO_ACTDE3.635e-1355.741-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO_DENCR4.747e-1354.101-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO_PRUMU6.200e-1355.741-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
ACCO_PERAE8.097e-1357.381-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO1_DORSP8.097e-1354.101-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCH1_ARATH8.097e-1359.021-aminocyclopropane-1-carboxylate oxidase homolog ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14E12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14E12-I24-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672036 ID=CX672036; Name=CX672036; organism=Citrus sinensis; type=EST; length=907bp
GAAAAGTGGAGCTACTAATATGAATGATGGGAGTCAGATACATCACTACT
CAAAGGTTAAAACAATGACGGAGTTTGCACACGAAAGTCAGCCCATACAC
ATAAAATCTAAAATTAAATGCAATACTAAAGGAGATAGAAATTGGCGGCA
CATTGCAATTACTCACGGTAGATTGACATCATTGGTTGCGAAGCCCAGGC
GCTGAGGAGAATCCCCAATGCATGCAGGAATAAGGCAGCTGCTAGCTAGT
TCTTGAAAAGTTCCAAACAATGTTCTTGGTCCAAGTTTCTGCTCCAAAAC
TTGCTGTAATATTCAGCATATGTGAAATCTCTGTATACGGCTCCAGATCC
ATCCTCTGTTAATGCTTTTGGAGGGCTGATCATTGCATCATTATTTGGGC
AAAGGAATGAAGCAACCGACATCCTTGCCTTTTCAGCATTCACAATAGCT
CTATGCCACACACTCTTATACCTTCCATTACTCAATGCCTACAGTTAATG
TCACTAAAATGTATTACCCGATGAATATTGATAATAAGCCATGCTCAGGT
CCACATTCGAATATTCTAAAATTTGGTGAATTGTACAATAAGGCACAACT
ATGATTCTAGTTCAAATCCAAATTTTACAAAATCCAGACATGCGAGCTTA
GGCACCAATATATTAGTATTAATGAAAAATGAAAGCACTAATTAAATAAA
ATTAAATTAAATTAAATATTGTTAGTTATTACCTGCAGTTGATCACCAAT
ATTAATGACAAAGGCATTAGGAAGGGGATTAACAGCAACCCATTTGTCGT
CTTTGAGAACTTGAAGACCTGCCACTTCTAAATCTTGCAATAAAATGGTA
AGGGCATTTGGGTCAGTGTGTCCTGGCAATCCATAAGTAAGCTCTGGCTC
TGGACAT
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