CX046126

Overview
NameCX046126
Unique NameCX046126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046126 vs. ExPASy Swiss-Prot
Match: PUR2_ARATH (Phosphoribosylamine--glycine ligase, chloroplastic OS=Arabidopsis thaliana GN=PUR2 PE=2 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 2.836e-53
Identity = 97/124 (78.23%), Postives = 114/124 (91.94%), Query Frame = -2
Query:  299 LAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSVIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEARDRAYLAVEEINWPGGFYRRDIGWRALPQKQFATRE 670
            LAAC+GEL+GV+L+WS  SAMVVVMAS GYPGSYEKGS+I+NLEEAE+VAP VK+FHAGT LD++GN +ATGGRVLGVTAKGKD+EEAR+RAY AV++INWPGGF+R DIGWRAL QKQ AT+E
Sbjct:  408 LAACKGELSGVSLDWSKDSAMVVVMASNGYPGSYEKGSIIKNLEEAERVAPGVKVFHAGTGLDSEGNVVATGGRVLGVTAKGKDLEEARERAYSAVQQINWPGGFFRHDIGWRALRQKQVATKE 531          
BLAST of CX046126 vs. ExPASy Swiss-Prot
Match: PUR2_VIGUN (Phosphoribosylamine--glycine ligase (Fragment) OS=Vigna unguiculata GN=PUR2 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.396e-46
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = -2
Query:  356 LAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSVIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEARDRAYLAVEEINWPGGF 670
            LAACRGEL GV+L WSPGSAMVVVMASKGYPGSY+KG+VI+NLEEAE VAP +KIFHAGTA D++G FIATGGRVLGVTAKG D+EEA DRAYLAVE +NWPGGF
Sbjct:  187 LAACRGELNGVSLKWSPGSAMVVVMASKGYPGSYQKGTVIENLEEAEAVAPGIKIFHAGTAFDSEGRFIATGGRVLGVTAKGNDLEEACDRAYLAVENVNWPGGF 291          

HSP 2 Score: 23.0978 bits (48), Expect = 2.396e-46
Identity = 8/19 (42.11%), Postives = 14/19 (73.68%), Query Frame = -1
Query:  300 LPARYWMESTSSKAICYKR 356
            LP+ YW+ES++S+    +R
Sbjct:  292 LPSGYWLESSTSETSMLER 310          
BLAST of CX046126 vs. ExPASy Swiss-Prot
Match: PUR2_RHIME (Phosphoribosylamine--glycine ligase OS=Rhizobium meliloti GN=purD PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 60/117 (51.28%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  317 AACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSVIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEARDRAYLAVEEINWPGGFYRRDIGWRALPQK 667
            AA  G L G+   W   +A+ VVMAS+GYPG+YEK + I  L +A   + + K+FHAGTA+   G  +A GGRVL VTA GK V EA+D AY AV +++W  GFYR DIGWRA+ ++
Sbjct:  309 AAATGTLEGMKAEWRDEAALTVVMASRGYPGAYEKDTPIAALPDA---SAATKVFHAGTAMKG-GGLVAAGGRVLNVTATGKTVGEAKDAAYAAVRDVSWENGFYRNDIGWRAVARE 421          
BLAST of CX046126 vs. ExPASy Swiss-Prot
Match: PUR2_RHILO (Phosphoribosylamine--glycine ligase OS=Rhizobium loti GN=purD PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.327e-26
Identity = 60/118 (50.85%), Postives = 84/118 (71.19%), Query Frame = -2
Query:  314 AACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSVIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEARDRAYLAVEEINWPGGFYRRDIGWRALPQKQ 667
            AA  G+L   ++ W   +A+ VVMA++GYPG+ EKGSVI+ +E+A      V+IFHAGTA++  G  +A GGRVL VTA G  V EA+ RAY A++ I+WP GF RRDIGW+A+ +++
Sbjct:  309 AAVDGQLAHTSIRWRDEAALTVVMAARGYPGTPEKGSVIRGVEQA--AGEGVQIFHAGTAING-GALVANGGRVLNVTASGATVGEAQKRAYAALDRIDWPDGFCRRDIGWQAVARER 423          
BLAST of CX046126 vs. ExPASy Swiss-Prot
Match: PUR2_BRUME (Phosphoribosylamine--glycine ligase OS=Brucella melitensis GN=purD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.263e-26
Identity = 61/118 (51.69%), Postives = 84/118 (71.19%), Query Frame = -2
Query:  314 AACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSVIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEARDRAYLAVEEINWPGGFYRRDIGWRALPQKQ 667
            AA  G L  V+L W    A+ VVMA++GYP + +KGSVI++LE+ E +   VK+FHAGTAL  DG  +A+GGRVL +TA    V +A+ RAY A++ I+WP GFYR DIGWRA+ +++
Sbjct:  309 AAVDGRLDEVSLEWKDEPALTVVMAAEGYPANVKKGSVIRDLEKLESI-DGVKLFHAGTALK-DGAIVASGGRVLNITATAATVAQAQARAYEALKLIDWPEGFYRSDIGWRAVEREK 424          
BLAST of CX046126 vs. ExPASy Swiss-Prot
Match: PUR2_BRUSU (Phosphoribosylamine--glycine ligase OS=Brucella suis GN=purD PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26
Identity = 61/118 (51.69%), Postives = 83/118 (70.34%), Query Frame = -2
Query:  314 AACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSVIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEARDRAYLAVEEINWPGGFYRRDIGWRALPQKQ 667
            AA  G L  V+L W    A+ VVMA++GYP + +KGSVI++LE+ E +   VK+FHAGTAL  DG  +A GGRVL +TA    V +A+ RAY A++ I+WP GFYR DIGWRA+ +++
Sbjct:  309 AAVDGRLDEVSLEWKDEPALTVVMAAEGYPANVKKGSVIRDLEKLESI-DGVKLFHAGTALK-DGAIVAGGGRVLNITATAATVAQAQARAYEALKLIDWPEGFYRSDIGWRAVEREK 424          
BLAST of CX046126 vs. ExPASy Swiss-Prot
Match: PUR2_AGRT5 (Phosphoribosylamine--glycine ligase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=purD PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.467e-25
Identity = 58/118 (49.15%), Postives = 80/118 (67.80%), Query Frame = -2
Query:  314 AACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSVIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEARDRAYLAVEEINWPGGFYRRDIGWRALPQKQ 667
            A   G L  V   W   +A+ VV+ASKGYPG+Y+K + I ++ EA + A   K+FHAGTAL  DG  +ATGGRVL VTA G++V EA+ RAY   +++ W  GF RRDIGW+A+ +++
Sbjct:  309 ATATGTLDKVQAEWRDDAALTVVLASKGYPGAYDKNTPIAHIPEASEEA---KVFHAGTALK-DGKLVATGGRVLNVTAFGRNVTEAQARAYALADKVEWENGFCRRDIGWQAIAREK 422          
BLAST of CX046126 vs. ExPASy Swiss-Prot
Match: PUR2_ECOL6 (Phosphoribosylamine--glycine ligase OS=Escherichia coli O6 GN=purD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.813e-23
Identity = 58/119 (48.74%), Postives = 75/119 (63.03%), Query Frame = -2
Query:  314 LAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSVIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEARDRAYLAVEEINWPGGFYRRDIGWRALPQKQ 670
            LAAC G+L   T  W   +++ VVMA+ GYPG Y  G VI  L   E+VA   K+FHAGT L  D   + +GGRVL VTA G  V EA+ RAY  + +I+W   F R+DIGWRA+ ++Q
Sbjct:  312 LAACEGKLDEKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLP-LEEVADG-KVFHAGTKLADDEQVVTSGGRVLCVTALGHTVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIEREQ 428          
BLAST of CX046126 vs. ExPASy Swiss-Prot
Match: PUR2_ECO57 (Phosphoribosylamine--glycine ligase OS=Escherichia coli O157:H7 GN=purD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.982e-22
Identity = 58/121 (47.93%), Postives = 74/121 (61.16%), Query Frame = -2
Query:  314 LAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSVIQNL--EEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEARDRAYLAVEEINWPGGFYRRDIGWRALPQKQ 670
            LAAC G+L   T  W   +++ VVMA+ GYPG Y  G VI  L  EE E      K+FHAGT L  D   + +GGRVL VTA G  V EA+ RAY  + +I+W   F R+DIGWRA+ ++Q
Sbjct:  312 LAACEGKLDEKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVEDG----KVFHAGTKLADDEQVVTSGGRVLCVTALGHTVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIEREQ 428          
BLAST of CX046126 vs. ExPASy Swiss-Prot
Match: PUR2_SYNY3 (Phosphoribosylamine--glycine ligase OS=Synechocystis sp. (strain PCC 6803) GN=purD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.589e-22
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = -2
Query:  326 LNWSPGSAMVVVMASKGYPGSYEKGSVIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEARDRAYLAVEEINWPGGFYRRDIGWRAL 634
            L W  G+A+ VV+A+ GYPGSY KG  I  L EAE  A  VK+FHAGT L  +G  +  GGRVLGVTA GKD+  A   AY  VE+I++ G +YRRDIG +AL
Sbjct:  320 LQWHSGNAVCVVVAAGGYPGSYRKGDEINGLAEAE--AQDVKVFHAGTELK-EGKVLTNGGRVLGVTALGKDLSTAIATAYRGVEQIDFDGMYYRRDIGHKAL 419          
The following BLAST results are available for this feature:
BLAST of CX046126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PUR2_ARATH2.836e-5378.23Phosphoribosylamine--glycine ligase, chloroplastic... [more]
PUR2_VIGUN2.396e-4682.86Phosphoribosylamine--glycine ligase (Fragment) OS=... [more]
PUR2_RHIME1.016e-2651.28Phosphoribosylamine--glycine ligase OS=Rhizobium m... [more]
PUR2_RHILO1.327e-2650.85Phosphoribosylamine--glycine ligase OS=Rhizobium l... [more]
PUR2_BRUME2.263e-2651.69Phosphoribosylamine--glycine ligase OS=Brucella me... [more]
PUR2_BRUSU5.041e-2651.69Phosphoribosylamine--glycine ligase OS=Brucella su... [more]
PUR2_AGRT51.467e-2549.15Phosphoribosylamine--glycine ligase OS=Agrobacteri... [more]
PUR2_ECOL66.813e-2348.74Phosphoribosylamine--glycine ligase OS=Escherichia... [more]
PUR2_ECO571.982e-2247.93Phosphoribosylamine--glycine ligase OS=Escherichia... [more]
PUR2_SYNY32.589e-2255.34Phosphoribosylamine--glycine ligase OS=Synechocyst... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_6A01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-6A01-B2-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046126 ID=CX046126; Name=CX046126; organism=Citrus sinensis; type=EST; length=674bp
TTTTTAGCTGAACCAATTACAGCTTGTGGGTATACAATTCGCACAACCGT
AATTCTCTTAGTATTGCATTATTAAGAAATTGCTGCACATCTTTGTTTGA
TTCATGTCAGTTAGAATACACTTTCGTTTGATTGATGTCAGTTAGAATAA
ACAATGAAGACTCCTTGGGTAACAAGGCTGAGAACCTCATCGACTGCATT
TTCCTTTGGTACATGATTCGGTAATACATGATCCATCTCAAACGTTAGAA
ACGGATAAAAAAAAAGTGCTAATTTCTGGGATCTGGACGTTAGTTTTACT
CTCTTGTAGCAAATTGCTTTTGAGGAAGTGCTCTCCATCCAATATCTCGC
CGGTAGAACCCTCCTGGCCAGTTGATTTCCTCCACTGCTAGGTAAGCTCT
ATCTCGTGCCTCTTCAACATCTTTTCCCTTTGCAGTAACCCCAAGAACAC
GGCCACCAGTGGCAATGAAGTTGCCATCCGCGTCAAGTGCTGTCCCTGCA
TGAAATATCTTTACAGAAGGAGCAACTTGTTCTGCTTCTTCGAGGTTCTG
GATCACAGATCCTTTCTCATAGGATCCGGGGTAACCTTTGCTCGCCATTA
CTACAACCATGGCAGATCCTGGGGACCAGTTCAGTGTTACCCCAGTTAAC
TCTCCTCTGCAAGCGGCAAGTCCT
back to top