CX672019

Overview
NameCX672019
Unique NameCX672019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672019_ssr632 microsatellite CX672019_ssr632:632..643. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX672019 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.189e-21
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = -1 
Query:  405 CLKVPASSFISSLKTTVDAIQQVVPVISKFANLFDDFRLTNAISDCLDLLDFSADELSWSISASQN 602
            CLKV A+ F  SLK T+DA+QQV  ++S+FAN F DFRL NAISDCLDLLDFSADEL+WS+SASQN
Sbjct:   48 CLKVSATEFAGSLKDTIDAVQQVASILSQFANAFGDFRLANAISDCLDLLDFSADELNWSLSASQN 113
[Close]
BLAST of CX672019 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.286e-17
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = -1 
Query:  402 DCLKVPASSFISSLKTTVDAIQQVVPVISKFANLFDDFRLTNAISDCLDLLDFSADELSWSISASQNP 605
            D LKVPAS F+SS+ T V  I+QV  ++S+FA+   D RL NA+SDCLDLLDFS++EL+WS SAS+NP
Sbjct:   26 DYLKVPASEFVSSINTIVVVIRQVSSILSQFADFSGDRRLQNAVSDCLDLLDFSSEELTWSASASENP 93
[Close]
BLAST of CX672019 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.887e-13
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = -1 
Query:  402 DCLKVPASSFISSLKTTVDAIQQVVPVISKFANLFDDFRLTNAISDCLDLLDFSADELSWSISASQNP 605
            +CL+VP   F  + KT VDAI + V ++SKF       R++NAI DC+DLLD +A+ELSW ISASQ+P
Sbjct:   38 ECLRVPPLEFAEAAKTVVDAITKAVAIVSKFDKKAGKSRVSNAIVDCVDLLDSAAEELSWIISASQSP 105
The following BLAST results are available for this feature:
BLAST of CX672019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PME_PRUPE2.189e-2172.73Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME44_ARATH7.286e-1761.76Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME32_ARATH4.887e-1352.94Probable pectinesterase/pectinesterase inhibitor 3... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14E03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14E03-I6-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672019 ID=CX672019; Name=CX672019; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTATTAATTAAAATCCATTCAATCCAACAAATTCAAAAAAGATAC
ATATAGTATCCAATGTAATCACCATGAATACATAATAAAACATCTTAAAT
TAAAAAAAAATCCCAAATATAAAACAACACGGTTAAGTTATAACCCCATA
AACCAAGCCAAGTTACCCAACAAAACTTCCAAAGATTAATGGAAACATTC
CAACAACAAGACTTTAAGCTTGACTTCCAGCAGTAATGCCCTCTTCTAGT
GGGAATACTCCAACATCCATACTCCAACACTCCAATGCAGACACTCAACA
ACACTCCAACCCATACCCAACAACCCACCATCTTCCAATAGCACTCTAAT
TCCAGCCACATACCCAGCAACATTCCAAACCAAACCAGCAAATAAATCAG
CGGGATTTTGGGAAGCAGAGATGGACCAGCTGAGCTCATCAGCAGAGAAA
TCAAGGAGATCAAGACAGTCTGATATAGCATTGGTAAGGCGAAAATCATC
AAACAAATTAGCAAATTTAGAAATAACAGGAACCACCTGTTGAATGGCAT
CAACGGTGGTCTTTAAAGAGCTTATGAAAGAGGAGGCTGGCACTTTCAAG
CAGTCGGCCTGCGAACATTCCGAGCCAGCATTGCTGCTGCTGCTCAAAGA
AACCGCACTTACCAAGAAAATAAAAATAAGAAGTTTGCAAAAATTCAGCA
TCTTTAAAGATGTATGAGACTGTAAAGGGAAAGACATTGATTCAGCGAAG
GGGAAAACCTGTGAATAATCACTTGCCAAAATAAA
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