CX671980

Overview
NameCX671980
Unique NameCX671980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671980_ssr741 microsatellite CX671980_ssr741:741..752. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX671980 vs. ExPASy Swiss-Prot
Match: AROD1_ARATH (Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.415e-16
Identity = 37/43 (86.05%), Postives = 42/43 (97.67%), Query Frame = -3
Query:  583 RYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMD 711
            +YFDYLFYIDFEASMAD RAQ+ALGHLQEFA+F+R+LGCYPMD
Sbjct:  347 KYFDYLFYIDFEASMADTRAQHALGHLQEFASFIRILGCYPMD 389          
BLAST of CX671980 vs. ExPASy Swiss-Prot
Match: AROD2_ARATH (Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.881e-15
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = -3
Query:  574 GFRYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDATL 717
            G +YFDYLFY+DFEASMAD  AQNAL HL+EFATFLRVLG YP+D T+
Sbjct:  333 GLKYFDYLFYVDFEASMADEVAQNALRHLEEFATFLRVLGSYPVDTTM 380          
BLAST of CX671980 vs. ExPASy Swiss-Prot
Match: AROD6_ARATH (Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.267e-12
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = -3
Query:  559 DSLIHGFRYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDATL*PESP 732
            D+ +   ++F+Y+FY+DFEASMA+ RAQNAL  +QEF +FLRVLG YPMD T  P SP
Sbjct:  352 DANVGTAKHFEYMFYVDFEASMAEARAQNALAEVQEFTSFLRVLGSYPMDMT--PWSP 407          
BLAST of CX671980 vs. ExPASy Swiss-Prot
Match: AROD4_ARATH (Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.867e-12
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = -3
Query:  577 FDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDAT 705
            F+Y+FY+DFEASMA+PRAQNAL  +QE+ +FLRVLG YPMD T
Sbjct:  372 FEYMFYVDFEASMAEPRAQNALAEVQEYTSFLRVLGSYPMDMT 414          
BLAST of CX671980 vs. ExPASy Swiss-Prot
Match: AROD3_ARATH (Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.867e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = -3
Query:  577 RYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDAT 711
            ++F+Y+FYIDFEASMA+ RAQNAL  +QEF +FLRVLG YPMD T
Sbjct:  364 KHFEYMFYIDFEASMAESRAQNALSEVQEFTSFLRVLGSYPMDMT 408          
BLAST of CX671980 vs. ExPASy Swiss-Prot
Match: AROD5_ARATH (Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.051e-12
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = -3
Query:  550 RYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDATL*PESPLPA 711
            ++F+Y FY+DFEASMA+ RAQNAL  +QE+ +FLRVLG YPMD T  P S LP+
Sbjct:  371 KHFEYTFYVDFEASMAEARAQNALAEVQEYTSFLRVLGSYPMDMT--PWSTLPS 422          
The following BLAST results are available for this feature:
BLAST of CX671980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AROD1_ARATH4.415e-1686.05Arogenate dehydratase/prephenate dehydratase 1, ch... [more]
AROD2_ARATH4.881e-1577.08Arogenate dehydratase/prephenate dehydratase 2, ch... [more]
AROD6_ARATH2.267e-1260.34Arogenate dehydratase/prephenate dehydratase 6, ch... [more]
AROD4_ARATH3.867e-1272.09Arogenate dehydratase 4, chloroplastic OS=Arabidop... [more]
AROD3_ARATH3.867e-1271.11Arogenate dehydratase 3, chloroplastic OS=Arabidop... [more]
AROD5_ARATH5.051e-1262.96Arogenate dehydratase 5, chloroplastic OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_14C06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C06-E12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671980 ID=CX671980; Name=CX671980; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTTTTTTTCAAAGAAAATATCTTATTCTTGATTCCATTACAAT
GTACATGACAAGTGTAAAAACAAAGATTTGTAGTTCTTTAAACAAAAATT
ACAGATAGGAGGCATGTGGTGGGGTCACCATCCTAGAGGACCTAGACCGC
ATGTGTTTGAATAACACCTATGTAAAATATCTTCTAAAGAAAAAGGAGGG
ATGCTGCAACGTGCAGCGAAAACCCAATATTTCTGGATTCAATCACTAAC
CGGTGAACCAAATTCTGTAACCTAGGTTTCAGACATTATCTACATAAGCT
TCACCAAACAGAACGCCAAAGCTTGAACCTACAATCCAAATCTACATACA
GCTTGAGGGCCATAAATTATCTACTTTTCCTTGAAGATTTCTTTTATTGA
CCAAGTCATCCCCACGCTCACTTCACCTGGCCAGAATTCAAATGGCTCAA
AACTTCTTGAAAGTGTGGCAGCAGTGCTCCAGCAGTCCCTTCCAAAGTGA
ATAGACTGTTCTGCAACCAGCTGAATGGGGAAGGAACAAAAACTAGGAAA
GCAGGCAAAGGAGACTCTGGCTATAGAGTTGCATCCATGGGATAGCAACC
AAGGACGCGAAGAAATGTAGCAAACTCCTGCAGATGGCCTAACGCATTTT
GTGCACGGGGATCGGCCATAGAAGCCTCAAAATCAATATAGAAAAGGTAG
TCGAAGTACCTGAAACCATGAATGAGTGAATCTAACTGCACAATCAATCA
ATATCTCCTCCCACCTCAACTAGAAAATAGTCTAATATTTACAAGATTAA
AAAGTCCAGCTTGAAACATACTTTTTGGAGCATAGCACACAGGAGATAAT
GTTATTACCAGATAGAACAAATCACTGGGTTCAAATT
back to top