CX671974

Overview
NameCX671974
Unique NameCX671974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671974_ssr128 microsatellite CX671974_ssr128:128..145. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig283 contig Csv1_Contig283:2..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y1192_THISH (UPF0061 protein Tgr7_1192 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=Tgr7_1192 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.150e-29
Identity = 83/202 (41.09%), Postives = 107/202 (52.97%), Query Frame = -3
Query:  259 PDIGLWNIAQFSTTLAAAKLIDDKE----ANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 843
            P I  WN+A  +  L      D+      A   ++R+  +F   + A+M  KLGL +  ++   +I +LL  MA   VDYT FFRAL        +P+      L+A   D      EA+ +W+  Y   L   G  D  R A M +VNPKYVLRNYL Q AI  AE  DF EV RL +L+ERP+DEQP ME YA LPP WA
Sbjct:  293 PRIAWWNLACLAQALLPLLHEDEAAGVELARAALDRFNGQFASCWTALMGAKLGLLETRREDLDLIERLLGLMAGSAVDYTRFFRALGRFHDPAWLPD------LRAAFRD-----PEAFDAWLADYRARLGHEGREDAARLADMLAVNPKYVLRNYLAQMAIAKAEQKDFSEVERLQRLLERPFDEQPEMEAYAALPPDWA 483          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y909_VIBPA (UPF0061 protein VP0909 OS=Vibrio parahaemolyticus GN=VP0909 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.004e-27
Identity = 68/200 (34.00%), Postives = 106/200 (53.00%), Query Frame = -3
Query:  262 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQ---ELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 843
            P I LWN++  +  L+   L++ ++    + ++  +   ++  +M  KLGL      + ++   +   +  +  DYT FFRALSN+   P+          + + L I +E  +AW+   L+  +   + +   IS E+R   M   NPKY+LRNYL Q AID AE GDF EV RL +++  PYD QP  E YA+LPP W
Sbjct:  291 PRIALWNLSALAHALSP--LVEREDLEQALSQFEGRLSQQFSRLMRSKLGLKTKIAEDGRLFESMFELLNQNHTDYTRFFRALSNLDKQPA---------QEVIDLFIDREAAQAWLDLYLARCELEVDEIGEPISAEQRSEQMRQTNPKYILRNYLAQLAIDKAEEGDFSEVHRLAEILRHPYDSQPEFEAYAKLPPEW 479          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y1896_VIBFM (UPF0061 protein VFMJ11_1896 OS=Vibrio fischeri (strain MJ11) GN=VFMJ11_1896 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.338e-26
Identity = 71/200 (35.50%), Postives = 106/200 (53.00%), Query Frame = -3
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P IGLWN++  + +L+   LID  +    +E+Y  K  D +  +M KKLGL    + + ++   +   ++ + VDYT F R LS++ +             K  ++D+  +R+ A + WV  Y+        S + R + M  VNPKYVLRNYL Q AI  A  GDF +V+ L  L+  P+DE P  E+YA LPP W  R
Sbjct:  293 PRIGLWNLSALAHSLSP--LIDKSDLEKALEQYEIKLHDYFSQLMRKKLGLLSKQEGDTRLFESMFELLSQNTVDYTRFMRVLSDLDSQD-----------KQTVIDLFVDREAATL-WVDLYLTRCKLEADSFDMRCSKMRKVNPKYVLRNYLAQQAIVKANEGDFSDVKILSTLLASPFDEHPDFERYAELPPEWGKR 478          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y1411_VIBHB (UPF0061 protein VIBHAR_01411 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=VIBHAR_01411 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.663e-26
Identity = 69/200 (34.50%), Postives = 105/200 (52.50%), Query Frame = -3
Query:  262 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQ---ELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 843
            P I LWN++  + +L+     +D EA   + ++  +   ++  +M  KLGL      + ++   +   +  +K DYT FFR LSN+         ++  P   + L I +E   AW+   L+  +   +     +S + R   M   NPKY+LRNYL Q AID AE GDF EV RL +L++RPYDEQP  + Y +LPP W
Sbjct:  291 PRIALWNLSALAHSLSPLVQREDLEA--ALGKFEVRLSQKFSELMRAKLGLHTKVDEDGRLFEAMFELLNQNKADYTRFFRELSNL---------DVKSPQAVIDLFIDREAASAWVDLYLARCELEVDECGERVSAQTRCEKMRRTNPKYILRNYLAQIAIDKAEEGDFSEVNRLAELLKRPYDEQPEFDDYTKLPPEW 479          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y1769_VIBF1 (UPF0061 protein VF_1769 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=VF_1769 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.262e-25
Identity = 71/200 (35.50%), Postives = 106/200 (53.00%), Query Frame = -3
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P IGLWN++  + +L+   LID  +    +E+Y  K  D +  +M KKLGL    + + ++   +   ++ + VDYT F RALS + +             K  ++D+  +R+ A + W+  Y+        S + R + M  VNPKYVLRNYL Q AI  A  GDF +V+ L  L+  P+DE P  E+YA LPP W  R
Sbjct:  293 PRIGLWNLSALAHSLSP--LIDKSDLEKALEQYEIKLHDYFSQLMRKKLGLLSKQEGDTRLFESMFELLSQNAVDYTRFMRALSYLDSQD-----------KQTVVDLFVDREAATL-WIDLYLTRCKLEVDSFDMRCSKMRKVNPKYVLRNYLAQQAIVKANEGDFSDVKILSTLLASPFDEHPDFERYAELPPEWGKR 478          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y9953_RHOBA (UPF0061 protein RB9953 OS=Rhodopirellula baltica GN=RB9953 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.648e-25
Identity = 75/220 (34.09%), Postives = 115/220 (52.27%), Query Frame = -3
Query:  247 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMER---YGTKFMDEYQAIMTKKLGLPKYNKQ----IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLL----------DIGKERKEAWISWVLSYIQELLSSG---ISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA-YRPG 843
            P I  WN+   +  L        KEA  +      Y  +F   + ++M  KLGL KY  +    ++  LL  + + + D T F+R L++++      E  + + L AVL           ++ +E ++A + W+ SY   +L+       D +R+  MN+VNPKYVLRNYL Q AIDA + GD   V  LL+++ RPYD+QPG E++A   P WA +RPG
Sbjct:  319 PQIAQWNLVALANALVPLV----KEAEPLQRGIAVYVEEFQKSWHSMMAGKLGLSKYESETDDELVDSLLTLLQLAETDMTIFYRRLADIELGTR--EQPVTLELAAVLRHLSEAHYVADEVTEEYQQALMDWMRSYQSRVLADDGFPAEDSQRRQRMNAVNPKYVLRNYLAQLAIDACDKGDDSLVSELLEVLRRPYDDQPGKERFAEKRPEWARHRPG 532          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y444_PSEPF (UPF0061 protein Pfl01_0444 OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pfl01_0444 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.648e-25
Identity = 70/196 (35.71%), Postives = 105/196 (53.57%), Query Frame = -3
Query:  262 IGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEE-RKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 837
            +G WN++  +  L    LI  +     +  Y   F   Y  +M ++LG       ++ ++ +LL  M    VDYT FFR L    A+ ++        L+   +DI     + + +W   Y+  +   G +D+E R+A M++VNP Y+LRNYL Q AIDAAE GD+ EVRRL  ++  P++EQPGME YA  PP W
Sbjct:  295 VGQWNLSTLAQALTP--LISVEALRETLGLYLPLFQAHYLDLMRRRLGFTTAEDDDQMLLEQLLQLMQNSGVDYTLFFRRLGEESAEQAVAR------LRDDFVDI-----KGFDAWGERYVARVARDGATDQEQRRARMHAVNPLYILRNYLAQKAIDAAEQGDYSEVRRLHAVLSNPFEEQPGMESYAERPPEW 477          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y3881_PSEU5 (UPF0061 protein PST_3881 OS=Pseudomonas stutzeri (strain A1501) GN=PST_3881 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.672e-25
Identity = 68/195 (34.87%), Postives = 102/195 (52.31%), Query Frame = -3
Query:  262 IGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 837
            I  WN+A  +  L     ++ K     ME +   +  E+  +M ++LG  +    + ++I +LL  M    VDYT FFR L    A+ ++        L+   +D+     + + +W   Y       G     R+A M++VNPKY+LRNYL Q AI+AAE GD+  VR L  ++ RP+DEQPGME+YA  PP W
Sbjct:  295 IAHWNLAALAQALTP--FVEVKVLRETMELFLPLYEAEWLDLMRRRLGFSQAEDGDAELIRRLLQLMQGSAVDYTRFFRELGERPAEQAVQR------LREDFIDL-----QGFDAWAADYCARSAREGGDPVARQARMHAVNPKYILRNYLAQQAIEAAEKGDYAPVRELHAVLSRPFDEQPGMERYAERPPEW 476          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y872_VIBSL (UPF0061 protein VS_0872 OS=Vibrio splendidus (strain LGP32) GN=VS_0872 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.796e-25
Identity = 70/197 (35.53%), Postives = 107/197 (54.31%), Query Frame = -3
Query:  262 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNK---QIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 843
            P IGLWN++  + +L+   L+D  +    +E+Y  +    +  +M +KLGL   ++   ++   +   M+ +KVDY  FFR LSN+  D  +P+D         ++D+  +R+ A + WV +Y+Q       S  ER   M  VNPKY+LRNYL Q AID AE GD  ++  L+ ++  PY E P  E  A LPP W
Sbjct:  293 PRIGLWNLSALAHSLSP--LVDKADLEAALEQYEPQMNGYFSQLMRRKLGLLSKHEGDSRLFESMFELMSQNKVDYPRFFRTLSNL--DTLLPQD---------VIDLVIDREAAKL-WVDNYLQRCELEESSVAERCEKMRQVNPKYILRNYLAQLAIDKAERGDSSDIDALMVVLADPYAEHPDYEHLAALPPEW 475          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y683_TOLAT (UPF0061 protein Tola_0683 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=Tola_0683 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.796e-25
Identity = 71/203 (34.98%), Postives = 111/203 (54.68%), Query Frame = -3
Query:  247 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA-YRPG 843
            P I  WN+ + +  L    + D       +E +   F  E  A++  KLG  ++   + +++++L + +   +VD T FFR L+ V  D S P+  +L        D+  + + A+  W+ +Y Q +LS G+   ER A MN VNP YVLRNYL Q  IDAAE G++  +  LL+++ +PY EQ G E YA+  P WA ++PG
Sbjct:  313 PAIARWNLERLAEALGTV-MTDHAILAQGIEMFDETFAQEMAAMLAAKLGWQQWLPEDSELVNRLFDLLQQAEVDMTLFFRRLALV--DVSAPDLTVLADA-FYRDDLFCQHQPAFTQWLTNYSQRVLSEGVLPAERAARMNQVNPVYVLRNYLAQQVIDAAEQGNYQPIAELLEVLRQPYTEQSGKEAYAQKRPDWARHKPG 511          
The following BLAST results are available for this feature:
BLAST of CX671974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
Y1192_THISH7.150e-2941.09UPF0061 protein Tgr7_1192 OS=Thioalkalivibrio sp. ... [more]
Y909_VIBPA3.004e-2734.00UPF0061 protein VP0909 OS=Vibrio parahaemolyticus ... [more]
Y1896_VIBFM4.338e-2635.50UPF0061 protein VFMJ11_1896 OS=Vibrio fischeri (st... [more]
Y1411_VIBHB9.663e-2634.50UPF0061 protein VIBHAR_01411 OS=Vibrio harveyi (st... [more]
Y1769_VIBF11.262e-2535.50UPF0061 protein VF_1769 OS=Vibrio fischeri (strain... [more]
Y9953_RHOBA1.648e-2534.09UPF0061 protein RB9953 OS=Rhodopirellula baltica G... [more]
Y444_PSEPF1.648e-2535.71UPF0061 protein Pfl01_0444 OS=Pseudomonas fluoresc... [more]
Y3881_PSEU53.672e-2534.87UPF0061 protein PST_3881 OS=Pseudomonas stutzeri (... [more]
Y872_VIBSL4.796e-2535.53UPF0061 protein VS_0872 OS=Vibrio splendidus (stra... [more]
Y683_TOLAT4.796e-2534.98UPF0061 protein Tola_0683 OS=Tolumonas auensis (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C03-E6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671974 ID=CX671974; Name=CX671974; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTTTAAAATAAAAAATTGTAATAAATAAAATGATTTC
GAAATGCATAAACTGTTAAAATTCTGCAAAGAAATAATGCCATACAAATT
ATTTCTACTTTTTTCTGCAGCCACAAAAATAATAATAATAATAATGATTC
GACTATTATATACATGAAGTTACAATCCTCTTTCTGGTATAGGTATAACA
TAATGCAGAGAATGGCAGATTACGATGAACAGGAAAGCATGCAAACACCT
GGTCGATAAGCCCATGCCGGGGGCAGGCGAGCATACTTTTCCATTCCTGG
TTGCTCGTCATATGGGCGTTCCATAAGTTTAAGCAACCTCCGCACCTCAC
CAAAATCTCCGAGCTCAGCTGCATCGATAGCACTCTGGCACAAGTAGTTT
CTAAGAACATATTTTGGGTTCACAGAATTCATCAATGCCTTCCTTTCCTC
ATCTGAGATGCCACTAGACAACAGCTCTTGTATGTACGATAACACCCAGC
TGATCCATGCCTCCTTCCGCTCCTTTCCGATATCTAACAAAACAGCCTTC
AGTGGAACTAACAACTCATCCTCTGGAATGCTGGGATCAGCTTTGACATT
GGAAAGTGCACGAAAGAAATTTGTGTAATCAACTTTGTCAACAGCCATAT
TGTTTAGAAGTTTACTAATAATCTGTTTATTGTATTTTGGAAGACCAAGT
TTCTTTGTCATAATGGCTTGATATTCATCCATAAACTTTGTTCCATATCT
TTCCATGACATAATTTGCCTCTTTATCATCTATCAATTTAGCTGCTGCTA
GAGTTGTGGAAAACTGTGCAATGTTCCACAAGCCAATATCAGGCT
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