CX671932

Overview
NameCX671932
Unique NameCX671932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671932_ssr28 microsatellite CX671932_ssr28:28..43. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671932_ssr695 microsatellite CX671932_ssr695:695..706. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671932_ssr380 microsatellite CX671932_ssr380:380..391. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX671932 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.324e-21
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 2
Query:  356 YCLCKQGLSQSVLQKAIDYACGAGADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 553
            +C+CK GLS +VLQ  +DYACG GADC P      C+NP+ V+ HCNYAVNS+FQ+KGQ+PGSC+F
Sbjct:   21 WCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNF 86          
BLAST of CX671932 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.079e-20
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2
Query:  320 LDFVLSXXXXXXYCLCKQGLSQSVLQKAIDYACGAGADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 553
            L  +++      +C+CK GLS SVLQK +DYACG GADC P    G C+NP+ V+ HCNYAVNS+FQ+KGQ   SC+F
Sbjct:    9 LTLLMAGHTSASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKGQASESCNF 86          
BLAST of CX671932 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.035e-19
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 2
Query:  356 YCLCKQGLSQSVLQKAIDYACGAGADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 553
            YCLCK+G ++ VLQKAIDYACG GADCT I   G C+ PNTV++HC+ AVNSY+Q+K  +  +CDF
Sbjct:   21 YCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDF 85          
BLAST of CX671932 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.366e-12
Identity = 30/77 (38.96%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  326 FVLSXXXXXXYCLCKQGLSQSVLQKAIDYACGAG-ADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 553
            F+ +      YC+   G+    LQ A+D+ACG G ++C+ I     C+ PN V+ H ++A NSY+Q++G+  GSCDF
Sbjct:  262 FLANDTTNQTYCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDF 338          
BLAST of CX671932 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.196e-11
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 2
Query:  356 YCLCKQGLSQSVLQKAIDYACGAGADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 553
            +C+ K+G +   LQ ++D+ACG G DC  I   G C+ PN V  H  YA+N YFQ+  + P  CDF
Sbjct:  364 WCVPKKGATNEELQASLDWACGHGIDCGAIQPGGACFEPNNVVSHAAYAMNMYFQKSPKQPTDCDF 429          
BLAST of CX671932 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.196e-11
Identity = 28/67 (41.79%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  356 YCLCKQGLSQSVLQKAIDYACGAG-ADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 553
            +C+ K+ + + +LQ A+D+ACG G  DC+ ++Q   C+ P+ V  H  YA N+Y+Q+ G+  GSCDF
Sbjct:  360 FCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDF 426          
BLAST of CX671932 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.039e-11
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 2
Query:  356 YCLCKQGLSQSVLQKAIDYACGAGA-DCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 553
            YC  ++G    +LQ A+D+ACG G  DC+PI Q   C+ P+ V  H NYA ++Y+ + G  P +C+F
Sbjct:  368 YCTAREGADTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANYAFDTYYHQTGNNPDACNF 434          
BLAST of CX671932 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.478e-11
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 2
Query:  356 YCLCKQGLSQSVLQKAIDYACGAGADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 553
            +C+ K G + + LQ  I+YACG   DC PI   G C++PN++Q H +Y +N+Y+Q  G T  +CDF
Sbjct:  377 WCVAKDGANGTDLQNNINYACGF-VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDF 441          
The following BLAST results are available for this feature:
BLAST of CX671932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
E13L2_ARATH6.324e-2162.12Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
E13L3_ARATH1.079e-2055.13Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
E13L4_ARATH2.035e-1962.12Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]
E131_ARATH5.366e-1238.96Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E137_ARATH1.196e-1143.94Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E133_ARATH1.196e-1141.79Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E132_ARATH2.039e-1141.79Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E13B_WHEAT3.478e-1143.94Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14A03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14A03-A6-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671932 ID=CX671932; Name=CX671932; organism=Citrus sinensis; type=EST; length=782bp
CCCGCTGTCTAGAATTCTCCTTTCTTGCTCTCTCTCTCTCTCTTTTTCTT
TTTCTCTCTCCCAGACACAGAAACTCAATCATCTTTCATTTCAGCTGCTA
CCTGCTTTCTCTTAAAAGGAGTTTTAATTCCCCATCATTTTTGCCTCACG
ATCTTGCATCGGTCATGGCTCTTATAGCTTATTTAGTGCTTTTCATGGCC
ATGACTGGCCATTCGAGTAGGCCTCTTTGATTGCTTGTGTCTTTCTTTCC
TTGTTATGTCTCTTGGTTTCTGTCTTAAAAAGTTCAAAAAAAAAAAGATC
TTTTTTTATTTGAACTGACCTTGATTTTGTTCTATCTTTGCTTGCAGCTG
CACTTTATTGCTTGTGCAAACAAGGGTTGAGTCAGTCAGTCCTCCAGAAA
GCTATAGACTATGCTTGTGGAGCCGGAGCTGACTGTACTCCAATCCTCCA
AAACGGTGTGTGTTGGAACCCCAACACGGTGCAAGATCACTGCAACTATG
CCGTTAACAGCTATTTCCAGAGAAAGGGCCAAACTCCTGGAAGCTGTGAT
TTTGCAGGCGCTGCTGCCACTAGTCCCAATCCCCCTCCCAATGCCGCCGG
CGGTTGTGTTTACCCATCAACTGGCAGCCCCGGGACAGGCACAGGCACAG
GCACAGGCGCAGGCACACCAACCACCACACCGACTACNACACCAACGACG
ACGACGCCTACGGGCACAAGCCCGGGCACATCCACGGTATTCGGTGGCAC
TGGCAGCTCGCTGGGCCCAACCGGCACCACTG
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