CX671913

Overview
NameCX671913
Unique NameCX671913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671913_ssr428 microsatellite CX671913_ssr428:428..437. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671913_ssr400 microsatellite CX671913_ssr400:400..414. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10199 contig Csv1_Contig10199:21..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671913 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.837e-44
Identity = 108/223 (48.43%), Postives = 132/223 (59.19%), Query Frame = 1
Query:  127 MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPVHXXXXXXXXXXXXXXXXXGNSPHXXXXXXXXXXXXXXXXXXXXSYVQSQPHSLTLDFTKPSLFSGNVKSTE-LEXXXXXXXXXXXXXXXXXAITGDGSVSNGKQGGSSIFL--APQAPAVSAGKPPLAAQPYKKRCQDHKDHSD 786
            M V++M  PK  MEDQTAIQEAA+QG+KSMEHLIR++S+     +VDCS++TD TVSKFKKVISLLNR+GHARFRRGPVH                  +S                      S+VQ+   S+TLDFT+PS+F    KS+E +E                 AITGDGSVS     GSSIFL  AP  P  S+GKPPL+  PY+KRC +H DHS+
Sbjct:    1 MTVDIMRLPK--MEDQTAIQEAASQGLKSMEHLIRVLSNRPEERNVDCSEITDFTVSKFKKVISLLNRSGHARFRRGPVHSPP---------------SSSVPPPVKVTTPAPTQISAPAPVSFVQANQQSVTLDFTRPSVFGAKTKSSEVVEFAKESFSVSSNSSFMSSAITGDGSVSK----GSSIFLAPAPAVPVTSSGKPPLSGLPYRKRCFEH-DHSE 201          
BLAST of CX671913 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 9.121e-43
Identity = 107/223 (47.98%), Postives = 127/223 (56.95%), Query Frame = 1
Query:  127 MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH-VDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPVHXXXXXXXXXXXXXXXXXGNSPHXXXXXXXXXXXXXXXXXXXXSYVQSQPHSLTLDFTKPSLFSGNVKSTELEXXXXXXXXXXXXXXXXXAITGDGSVSNGKQGGSSIFL--APQAPAVSAGKPPLAAQPYKKRCQDHKDHSD 786
            MAV+LM FPK  ++DQTAIQEAA+QG++SMEHLIR++S+     H VDCS++TD TVSKFK VISLLNRTGHARFRRGPVH                                            +   P S+TLDF+KPS+F    KS ELE                 AITGDGSVSNGK     IFL  AP  P  S+GKPPLA  PY+KRC +H +HS+
Sbjct:    1 MAVDLMRFPK--IDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKFKTVISLLNRTGHARFRRGPVH-----------STSSAASQKLQSQIVKNTQPEAPIVRTTTNHPQIVPPPSSVTLDFSKPSIFGTKAKSAELEFSKENFSVSLNSSFMSSAITGDGSVSNGK-----IFLASAPLQPVNSSGKPPLAGHPYRKRCLEH-EHSE 204          
The following BLAST results are available for this feature:
BLAST of CX671913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WRK17_ARATH4.837e-4448.43Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRK11_ARATH9.121e-4347.98Probable WRKY transcription factor 11 OS=Arabidops... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13H04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13H04-O7-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671913 ID=CX671913; Name=CX671913; organism=Citrus sinensis; type=EST; length=867bp
AGAGCCTCCACCCTCGCAGCCTCAGCCTTAAGTTTTACTTTTTCAAAGGG
TTTCGTCGAATGACATCTTGAGGCTTTTCCAAATTGCTCTCATTTGGTAG
CAGAAACTTTTTCGTTTTTCCAAATCATGGCGGTGGAGCTGATGGGATTT
CCAAAAAGGATGATGGAAGATCAGACGGCGATACAAGAAGCTGCAACGCA
AGGGATCAAAAGCATGGAGCACCTGATCCGTCTCATGTCTCATCACCAAT
CCTCGAATCACGTTGACTGCTCGGACCTCACCGATCTCACCGTCTCTAAG
TTCAAAAAAGTCATTTCCCTGCTCAACCGAACCGGTCACGCCCGGTTCAG
GCGCGGGCCGGTTCACTCTTCGCCTTCATCTTCATCTGCATCTGCGCCAG
CCGCCGCCGCCGCCTCAGGCAACTCTCCACACACACAGACCTTAACTCTT
ACTCCGCCTGCTCCTACGATGGCTGTCGCTCCCTCTACGGCGAGTTACGT
CCAGTCACAGCCGCACAGTCTGACTCTTGATTTTACAAAACCTAGTTTGT
TTAGCGGAAACGTCAAGAGCACTGAGCTCGAGTTTTCCAAAGACAGCTTC
TGTGTGTCGTCGAACTCGTCCTTCATGTCCTCTGCTATCACCGGAGACGG
CAGCGTTTCGAACGGGAAGCAAGGAGGATCTTCGATCTTCTTGGCGCCAC
AAGCTCCTGCTGTTTCCGCTGGAAAGCCGCCGCTCGCGGCTCAGCCTTAC
AAGAAGAGGTGTCAAGATCATAAAGATCATTCCGATGATCTTTCCGGCAA
GTTCTCGGGCTCCACCTCTGGCACAACAAGTGTCACTGCTCTAAGAGAAG
GTACGTGTTGTCAAATT
back to top