EY664568

Overview
NameEY664568
Unique NameEY664568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664568_ssr235 microsatellite EY664568_ssr235:235..249. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:23..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664568 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.410e-50
Identity = 110/176 (62.50%), Postives = 128/176 (72.73%), Query Frame = 3
Query:  144 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGMFAMLGLVALAFTEFVXGAPL 647
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNG  AMLGLVALAFTEFV G  L
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSL 195          
BLAST of EY664568 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.292e-36
Identity = 89/200 (44.50%), Postives = 124/200 (62.00%), Query Frame = 3
Query:   75 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGMFAMLGLVALAFTEFVXGAPLFKL 656
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNG FAM+GLVALAFTE+V G PL  +
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLINV 199          
BLAST of EY664568 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.193e-33
Identity = 75/133 (56.39%), Postives = 94/133 (70.68%), Query Frame = 3
Query:  264 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGMFAMLGLVALAFTEFVXGAPLFKL 656
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNG FAMLGLVALA TEF+ GAP   +
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFVNI 231          
BLAST of EY664568 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.342e-33
Identity = 87/191 (45.55%), Postives = 112/191 (58.64%), Query Frame = 3
Query:   87 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGMFAMLGLVALAFTEFVXGAPLFKL 656
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNG FAMLGLVALA TE + GAP   +
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFINV 172          
BLAST of EY664568 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.550e-32
Identity = 68/123 (55.28%), Postives = 85/123 (69.11%), Query Frame = 3
Query:  291 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGMFAMLGLVALAFTEFVXGAPLFKL 656
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNG FAM+GLVALA TE + G P   +
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFINV 167          
BLAST of EY664568 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.234e-18
Identity = 62/132 (46.97%), Postives = 73/132 (55.30%), Query Frame = 3
Query:  267 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGMFAMLGLVALAFTEFVXGAPLF 650
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NG FAM+G  A+   E + G  LF
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIALF 172          
The following BLAST results are available for this feature:
BLAST of EY664568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA8.410e-5062.50Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL5.292e-3644.50Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU4.193e-3356.39High molecular mass early light-inducible protein ... [more]
ELI9_HORVU9.342e-3345.55Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU3.550e-3255.28Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA2.234e-1846.97Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-068-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664568 ID=EY664568; Name=EY664568; organism=Citrus sinensis; type=EST; length=781bp
CAGGGAACCCGCCGACCTGAAGCACCCAATTCCCGAATTATACTTTGTTC
TGTTTTCTACTTCATAAATTAAAAATGGCCGCATCACTTGCTACTCAATC
TATGCTGGCAAGTCCTGTAGCAGCTCGTGTGACTGGTATCAGGAGATCCG
GGGCAAACCAACTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAAT
GTCAACTTATCCGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGCA
GAAAGATGATCAACCAACCATACCGAAAGCTGAGCCTCAGCCACCAAAGA
AGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTTGCGTTCAGCGGGCCG
GCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGC
ATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCAG
ACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTTGCG
TCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGG
GTTCATGACTTCGGATGCTGAGTTGTGGAATGGGATGTTTGCTATGCTGG
GCCTTGTTGCTTTGGCTTTCACCGAGTTTGTAANGGGTGCACCCTTGTTT
AAGCTTAATTTTGTTTAAATCTGTAAATCTGTATTTTTTTTACTAATTAT
GGATGAGATCCTACTGTNATTAAATCTCTATTTCTCATGCCATTCTGGTA
TTCACCACCATTTTCTAAAAAAAAAAAAAAA
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