CX671901

Overview
NameCX671901
Unique NameCX671901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8884 contig Csv1_Contig8884:387..1161. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671901 vs. ExPASy Swiss-Prot
Match: FB118_ARATH (F-box protein At2g26850 OS=Arabidopsis thaliana GN=At2g26850 PE=2 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.076e-97
Identity = 155/198 (78.28%), Postives = 177/198 (89.39%), Query Frame = -2 
Query:  172 NSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 765
            +S M++YL+LETGRFWFPAQVYNRENGHVGFMLSCYDAELSYD  T+TFQARYPPHG+R IA+E  V WER+RAAPVD SPH+L++SD LN+L PGDHIEIQWRRNKEFPYGWWY VVGH+ESCDGN N C CHNSE ++LEFNQYT GSRWRKT INR+DHRE+GNE DGFYGGIRK+N +E+I+MWKRLWP  +LE
Sbjct:  174 DSTMNFYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTDTNTFQARYPPHGKRAIAVEKDVTWERIRAAPVDASPHNLYVSDSLNELKPGDHIEIQWRRNKEFPYGWWYSVVGHMESCDGNLNHCQCHNSEMMVLEFNQYTVGSRWRKTMINRRDHREKGNEEDGFYGGIRKINCKEDIEMWKRLWPSSILE 371
[Close]
BLAST of CX671901 vs. ExPASy Swiss-Prot
Match: FB121_ARATH (F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 7.216e-94
Identity = 155/198 (78.28%), Postives = 171/198 (86.36%), Query Frame = -2 
Query:  172 NSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 765
            +S MS YL+LETGRFWFPAQVYNRENGHVGFMLSCYDAELSYD  TDTFQARYPPHGRR  AIE GV W+R+RAAP+D SPH LH+SD L +L PGDHIEIQWRRNKEFPYGWWYG+V HLESCDG+ N CHCH SET++LEFNQYT GSRWR+T I R DH+EEGNE DGFYGGIRK+N +EEI MWKR WP  +LE
Sbjct:  175 DSSMSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQARYPPHGRRASAIEKGVTWDRIRAAPIDASPHLLHVSDSLKELKPGDHIEIQWRRNKEFPYGWWYGLVRHLESCDGDHNHCHCHLSETVVLEFNQYTVGSRWRRTMIMR-DHKEEGNEEDGFYGGIRKLNCKEEIAMWKRHWPCSILE 371
[Close]
BLAST of CX671901 vs. ExPASy Swiss-Prot
Match: FB132_ARATH (F-box protein At2g41170 OS=Arabidopsis thaliana GN=At2g41170 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 9.468e-78
Identity = 126/198 (63.64%), Postives = 153/198 (77.27%), Query Frame = -2 
Query:  172 NSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 765
            +S+M WY  LE G+FWFPAQVYNRENGHVGFM+SCYDA++ YD  TDTFQARY  HGRR  A E  V W+RLR +  DT   DLH+SDCL+ L PGDH EIQWRR KEFPYGWW+G+VGHL++CDG +N C C + E +++EF Q+ P S WR+T I RKDHRE GNE +GFYGG++K+  EEEI  WK+LWP + LE
Sbjct:  177 DSVMYWYSNLENGKFWFPAQVYNRENGHVGFMMSCYDAKIRYDFKTDTFQARYSAHGRR--AAEEKVTWQRLRPSQDDTKSRDLHVSDCLHGLRPGDHFEIQWRRTKEFPYGWWFGIVGHLQNCDGVQN-CRCDSDENVVMEFRQFRPESPWRRTVIKRKDHRETGNEENGFYGGVKKLGTEEEISTWKQLWPSQALE 371
The following BLAST results are available for this feature:
BLAST of CX671901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FB118_ARATH1.076e-9778.28F-box protein At2g26850 OS=Arabidopsis thaliana GN... [more]
FB121_ARATH7.216e-9478.28F-box protein At2g32560 OS=Arabidopsis thaliana GN... [more]
FB132_ARATH9.468e-7863.64F-box protein At2g41170 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13G10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13G10-M19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671901 ID=CX671901; Name=CX671901; organism=Citrus sinensis; type=EST; length=775bp
GAATATCTATCTCCCATAAAAAATTATCGCCAAGCATAAGCCCTCCCCAT
TCATGCTACAGAATCGGAAGCACATTTTCAGATTCTCTAAGGCTGAATTT
CACTTAATCAGAAGGATATCATTAATAGGTTCTATGTTCATCAAATCGTG
GCACTGTGGGGCATGCCTCTATTCCAATACTTCTACTGGCCAAAGCCTCT
TCCACATTTTAATTTCCTCCTCATTGTTAACCTTTCTGATTCCCCCGTAA
AATCCATCCGCCTCATTTCCCTCCTCTCTATGATCTTTCCTGTTGATTGT
TGTTTTTCTCCATCGTGACCCAGGTGTGTACTGATTGAACTCCAAAATTA
GGGTTTCACTATTATGGCAGTGGCAGAAGTTTTCATTCCCATCACATGAT
TCCAAGTGACCGACAACACCATACCACCAACCATAGGGGAATTCTTTGTT
TCTTCTCCATTGAATCTCTATGTGATCACCTGGGTGCAAATCATTCAAGC
AATCTGAAATGTGAAGATCGTGGGGTGAAGTATCAACAGGTGCTGCTCTA
AGCCTTTCCCATGGCACCCCACACTCTATAGCAATTGGCCTCCTTCCATG
TGGTGGATATCTGGCTTGGAAGGTGTCGGTACTCTGATCATAGCTAAGCT
CTGCATCATAGCATGAGAGCATAAAGCCAACATGACCATTCTCGCGATTA
TAGACTTGAGCAGGGAACCAAAAGCGGCCAGTCTCCAGAGCAAGATACCA
AGACATGATTGAATTTGAATCAACA
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