CX671900

Overview
NameCX671900
Unique NameCX671900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671900 vs. ExPASy Swiss-Prot
Match: FB121_ARATH (F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.664e-35
Identity = 89/214 (41.59%), Postives = 119/214 (55.61%), Query Frame = 3
Query:  192 MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLAS---RKDSTHLKQGKQRLWMKLXXXXXXXXXXXXKVHDTSKQTTTTRLPVDSNQSC 824
            MLLY +ITC S   F   L+L   PPWA  T+  L         SF+ I +   N+L+ T     SP +                    +MSVLDLPEL L+CIL+ LPPSGLC+MA VCSSLR+RC+SDHLWEKH+K KWG+I+GPAA+REWQ +++S     DS H + G    + K+            +  D  ++   + LP+DS+ SC
Sbjct:    1 MLLYFLITCLSFFFFTKSLSL---PPWASETKTLL---------SFYFIKNPFMNTLHQTKHDPASPVID-------------------QMSVLDLPELALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISSSTYHLDSPHHQTGNLG-FAKIISLIRSLSSVFRE--DKQRRGYASSLPLDSSMSC 180          
BLAST of CX671900 vs. ExPASy Swiss-Prot
Match: FB118_ARATH (F-box protein At2g26850 OS=Arabidopsis thaliana GN=At2g26850 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.621e-31
Identity = 80/169 (47.34%), Postives = 100/169 (59.17%), Query Frame = 3
Query:  192 MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLAS--RKDSTHLK 692
            MLLYL+ITC S   F   L+    P WA  T+  LLS  F K +          NSL+  T  + SP L                    +MS+LDLP+L L+CILE LPPS LC MA VCSSLR+RC+SDHLWEKH+K KWG+I+GP+A++EWQ +L+S    DS H K
Sbjct:    1 MLLYLLITCLSFFFFSKSLSF---PQWASKTK-NLLSFYFSKYL--------FTNSLHQITPDLASPVLG-------------------KMSILDLPDLPLDCILELLPPSELCTMARVCSSLRERCVSDHLWEKHLKTKWGKILGPSAHKEWQCYLSSPYHLDSPHHK 138          
BLAST of CX671900 vs. ExPASy Swiss-Prot
Match: FB132_ARATH (F-box protein At2g41170 OS=Arabidopsis thaliana GN=At2g41170 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.912e-24
Identity = 59/127 (46.46%), Postives = 77/127 (60.63%), Query Frame = 3
Query:  288 LRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLAS 668
            L  +S CF   I  F I S L  S+    I   + +   K       D         +MS+LDLP+L L+CILEKL PS LC M +VCS LRD+C+SDHLWEKHM+ KWGR++G AA +EW+ H+A+
Sbjct:    6 LTFISFCFSITICGFLIVSWLARSIIRNGIRTLTWRKETKRKKKNQEDE-------NKMSLLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDHLWEKHMETKWGRLMGDAAIQEWKSHVAT 125          
The following BLAST results are available for this feature:
BLAST of CX671900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FB121_ARATH6.664e-3541.59F-box protein At2g32560 OS=Arabidopsis thaliana GN... [more]
FB118_ARATH2.621e-3147.34F-box protein At2g26850 OS=Arabidopsis thaliana GN... [more]
FB132_ARATH6.912e-2446.46F-box protein At2g41170 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13G10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13G10-M19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671900 ID=CX671900; Name=CX671900; organism=Citrus sinensis; type=EST; length=840bp
CTTGGAAGGGGAAGAGGAAGAGAAAAGCTAAAATAATAACAATTGCATTG
TTTTTCCTCTTCATCTAGCCATTGCCTTTTCCACTAGTGGGTTTCTGTCT
CTCCATTGGCCTTATCATTTATGCCAAACTTGAATTTGACACATAAGAAA
ATAGCCCTTCCTTTTTTGTTTTTTGCTCCAGATTGTATGTAATGCTACTT
TACTTGATCATTACTTGTTTCTCTTTAATTCTCTTTTTAAATTGCCTTGC
TCTAAAGCCACTCCCACCATGGGCAAGGCCAACTGAGTTGAGATTGCTGT
CTCTTTGTTTTTGGAAAGAGATATCATTTTTTTCCATTCCAAGCTCCTTA
AAGAACAGCTTGAACATCACTACAATCATTATTCCCTCACCAAAACTGTC
TTTTAAACACATGATGAGTACCTCTAATGATCACGTTGAAGAAGTGAGTG
GAGGAGCAGAGATGTCAGTTCTAGACTTGCCTGAGTTGGTCTTAGAATGT
ATTCTTGAGAAATTACCACCTTCGGGGCTTTGCAACATGGCTGCTGTTTG
TAGTTCATTGAGAGATAGATGTATGAGTGATCACCTTTGGGAGAAACATA
TGAAGCAAAAATGGGGTCGAATTGTTGGCCCTGCTGCTTATAGAGAGTGG
CAATGGCATCTTGCTTCTAGAAAAGATTCTACTCATCTTAAACAAGGAAA
GCAAAGACTTTGGATGAAGCTTTTCTCTTTTGTTCGATCGTTTTCTTGGG
TCCGATCAAAGGTTCATGATACTAGCAAGCAGACAACAACAACTCGTTTG
CCTGTTGATTCAAATCAATCATGTCTTGGTATCTTGCTCT
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