CX671889

Overview
NameCX671889
Unique NameCX671889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12704 contig Csv1_Contig12704:42..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671889 vs. ExPASy Swiss-Prot
Match: T184C_PONAB (Transmembrane protein 184C OS=Pongo abelii GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.408e-15
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 3 
Query:    3 LIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSV----QDFIICIEMAIASIVHLYVFPAKPYEQ---MGECFSGDISV 299
            L+ FY V K+EL+ I+P+ KFL  K +VF+++WQ V IALL  +G+         Q   +V    QDFIICIEM +A+I H Y F  KPY Q    G CF   +++
Sbjct:  228 LLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVVIALLVKVGVISEKHTWEWQTVEAVATGLQDFIICIEMFLAAIAHHYTFSYKPYVQEAEEGSCFDSFLAM 333
[Close]
BLAST of CX671889 vs. ExPASy Swiss-Prot
Match: T184C_BOVIN (Transmembrane protein 184C OS=Bos taurus GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.408e-15
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 3 
Query:    3 LIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSV----QDFIICIEMAIASIVHLYVFPAKPYEQ---MGECFSGDISV 299
            L+ FY V K+EL+ I+P+ KFL  K +VF+++WQ V IALL  +G+         Q   +V    QDFIICIEM +A+I H Y F  KPY Q    G CF   +++
Sbjct:  228 LLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVVIALLVKVGVISEKHTWEWQTVEAVATGLQDFIICIEMFLAAIAHHYTFSYKPYVQEAEEGSCFDSFLAM 333
[Close]
BLAST of CX671889 vs. ExPASy Swiss-Prot
Match: T184C_MOUSE (Transmembrane protein 184C OS=Mus musculus GN=Tmem184c PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.145e-15
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 3 
Query:    3 LIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSV----QDFIICIEMAIASIVHLYVFPAKPY---EQMGECFSGDISV 299
            L+ FY V K+EL+ I+P+ KFL  K +VF+++WQ V IALL  LG+         Q   +V    QDFIICIEM  A+I H Y F  KPY    + G CF   +++
Sbjct:  228 LLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVLIALLVKLGVISEKRTWEWQSAEAVATGLQDFIICIEMFFAAIAHHYTFSYKPYVHEAEEGSCFDSFLAM 333
[Close]
BLAST of CX671889 vs. ExPASy Swiss-Prot
Match: T184C_HUMAN (Transmembrane protein 184C OS=Homo sapiens GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 3 
Query:    3 LIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSV----QDFIICIEMAIASIVHLYVFPAKPYEQ---MGECFSGDISV 299
            L+ FY V K+EL+ I+P+ KFL  + +VF+++WQ V IALL  +G+         Q   +V    QDFIICIEM +A+I H Y F  KPY Q    G CF   +++
Sbjct:  228 LLLFYKVLKEELSPIQPVGKFLCVRLVVFVSFWQAVVIALLVKVGVISEKHTWEWQTVEAVATGLQDFIICIEMFLAAIAHHYTFSYKPYVQEAEEGSCFDSFLAM 333
[Close]
BLAST of CX671889 vs. ExPASy Swiss-Prot
Match: T184C_RAT (Transmembrane protein 184C OS=Rattus norvegicus GN=Tmem184c PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 3 
Query:    3 LIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSV----QDFIICIEMAIASIVHLYVFPAKPY---EQMGECFSGDISV 299
            L+ FY V K+EL+ I+P+ KFL  K +VF+++WQ V IALL  +G+         Q   +V    QDFIICIEM  A+I H Y F  KPY    + G CF   +++
Sbjct:  228 LLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVLIALLVKVGVISEKRTWEWQSAEAVATGLQDFIICIEMFFAAIAHHYTFSYKPYVHEAEEGPCFDSFLAM 333
[Close]
BLAST of CX671889 vs. ExPASy Swiss-Prot
Match: T184C_CHICK (Transmembrane protein 184C OS=Gallus gallus GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 3 
Query:    3 LIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSV----QDFIICIEMAIASIVHLYVFPAKPYEQ---MGECFSGDISV--LGDYSAD 320
            L+ FY V ++EL  I+P+ KFL  K +VF+++WQ V IALL  +G+         Q   +V    QDFIIC+EM +A+I H Y F  KPY Q    G CF   +++  + D  AD
Sbjct:  226 LVLFYKVLREELNPIQPVGKFLCVKMVVFVSFWQAVLIALLVKVGVISEKHTWEWQSVEAVATGLQDFIICVEMFLAAIAHHYSFSYKPYVQEAEEGSCFDSFLAMWDISDIRAD 340
[Close]
BLAST of CX671889 vs. ExPASy Swiss-Prot
Match: T184C_XENLA (Transmembrane protein 184C OS=Xenopus laevis GN=tmem184c PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.662e-14
Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = 3 
Query:    3 LIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKS--------PIAQGLQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQ---MGECFSGDISV--LGDYSAD 320
            L+ FY V K+EL  I+P+ KFL  K +VF+++WQ V IA+L   G+  +         +A GL      QDFIIC+EM +A++ H Y F  KPY Q    G CF   +++  + D  AD
Sbjct:  226 LVLFYKVLKEELNPIQPVGKFLCVKMVVFVSFWQAVFIAILVKAGVISNTWEWKRVQDVATGL------QDFIICVEMFLAAVAHHYSFTYKPYVQEAEEGSCFDSFLAMWDISDIRAD 338
[Close]
BLAST of CX671889 vs. ExPASy Swiss-Prot
Match: T184C_XENTR (Transmembrane protein 184C OS=Xenopus tropicalis GN=tmem184c PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.746e-14
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 3 
Query:    3 LIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKS--------PIAQGLQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQ---MGECFSGDISV--LGDYSAD 320
            L+ FY V K+EL  I+P+ KFL  K +VF+++WQ V IA+L   G+  +         +A GL      QDFIIC+EM +A++ H + F  KPY Q    G CF   +++  + D  AD
Sbjct:  226 LVLFYKVLKEELNPIQPVGKFLCVKMVVFVSFWQAVFIAILVKAGVISNTWEWKKVQDVATGL------QDFIICVEMFLAAVAHHFSFTYKPYVQEAEEGSCFDSFLAMWDISDIRAD 338
[Close]
BLAST of CX671889 vs. ExPASy Swiss-Prot
Match: T184A_RAT (Transmembrane protein 184A OS=Rattus norvegicus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 3 
Query:    3 LIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQ--------FKSSVQDFIICIEMAIASIVHLYVFPAKPYEQ 266
            L  FY  T+D L   +P+ KFLT K+I+FL++WQG+ +A+L   G+   P  Q +           +  Q+F+ICIEM  AS+   Y FP++ Y +
Sbjct:  241 LFLFYFATRDLLRPFEPVLKFLTIKAIIFLSFWQGMLLAILERCGVI--PEVQAVDGTRVGAGTLAAGYQNFLICIEMLFASLALRYAFPSQVYSE 334
[Close]
BLAST of CX671889 vs. ExPASy Swiss-Prot
Match: T184A_MOUSE (Transmembrane protein 184A OS=Mus musculus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 3 
Query:    3 LIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQ--------FKSSVQDFIICIEMAIASIVHLYVFPAKPYEQ 266
            L  FY  T+D L   +P+ KFLT K+I+FL++WQG+ +A+L   G+   P  Q +           +  Q+F+IC+EM  AS+   Y FP++ Y +
Sbjct:  241 LFLFYFATRDLLRPFEPVLKFLTIKAIIFLSFWQGMLLAILERCGVI--PEVQAVDGTRVGAGTLAAGYQNFLICVEMLFASLALRYAFPSQVYSE 334
The following BLAST results are available for this feature:
BLAST of CX671889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
T184C_PONAB2.408e-1543.40Transmembrane protein 184C OS=Pongo abelii GN=TMEM... [more]
T184C_BOVIN2.408e-1543.40Transmembrane protein 184C OS=Bos taurus GN=TMEM18... [more]
T184C_MOUSE3.145e-1543.40Transmembrane protein 184C OS=Mus musculus GN=Tmem... [more]
T184C_HUMAN5.365e-1542.45Transmembrane protein 184C OS=Homo sapiens GN=TMEM... [more]
T184C_RAT9.151e-1542.45Transmembrane protein 184C OS=Rattus norvegicus GN... [more]
T184C_CHICK9.151e-1540.87Transmembrane protein 184C OS=Gallus gallus GN=TME... [more]
T184C_XENLA2.662e-1439.50Transmembrane protein 184C OS=Xenopus laevis GN=tm... [more]
T184C_XENTR7.746e-1438.66Transmembrane protein 184C OS=Xenopus tropicalis G... [more]
T184A_RAT6.138e-1137.50Transmembrane protein 184A OS=Rattus norvegicus GN... [more]
T184A_MOUSE8.016e-1136.46Transmembrane protein 184A OS=Mus musculus GN=Tmem... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13G03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13G03-M5-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671889 ID=CX671889; Name=CX671889; organism=Citrus sinensis; type=EST; length=797bp
GTCTAATTCAATTTTATACAGTCACAAAAGATGAATTGGCACACATAAAG
CCATTGGCCAAGTTTTTGACATTTAAGTCAATTGTATTTTTGACTTGGTG
GCAAGGTGTAGCAATTGCTCTTCTTTATTCCCTTGGTTTGTTTAAAAGTC
CTATAGCTCAAGGCTTGCAGTTTAAATCCAGTGTCCAAGACTTCATCATT
TGTATAGAGATGGCAATTGCTTCTATTGTTCACCTATACGTATTCCCTGC
AAAGCCTTACGAGCAAATGGGAGAGTGCTTTTCTGGGGATATTTCGGTCC
TTGGAGACTACTCTGCTGATTGTCCGCTGGACCCTGACGAGATTCGGGAC
AGTGAGAGACCCACAAAGTTACGGCTACCCCAGCCAGATGTTGACATCAA
GAGTGGAATGACCATCAGAGAAAGTGTCCGGGATGTTTTTGTTGGTGGCA
GTGGATACATTGTGAATGATGTGAAGTTCACTGTAAACCAAGCAGTAGAG
CCTGTGGAGAAGGGGATTACAAAGTTCAATGAGAAGATACATAAGATCTC
CCAAAATATAAAGAGGCATGACAAGGATAGGAGAAAAACAAAGGATGATA
GTTGTATTGCCTCCTCACACACAAGGAGGGTGATACGTGGGATTGATGAC
CCCCTGTTAAATGGGAGCATCAGTGATAGTGCGCCCACAAGGAAGAAGCA
CCGCAGAAAGTCAGGATACACCAGTGGCGAGAGCGGTGGAGAAAGTAGCA
GTGATCAAAACTATGGTGGTTACGAGATTAGGGGTCGAAGGTGGGTC
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