CX671884

Overview
NameCX671884
Unique NameCX671884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671884_ssr27 microsatellite CX671884_ssr27:27..38. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671884_ssr180 microsatellite CX671884_ssr180:180..194. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671884_ssr209 microsatellite CX671884_ssr209:209..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5981 contig Csv1_Contig5981:103..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671884 vs. ExPASy Swiss-Prot
Match: SELT_ARATH (SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.696e-57
Identity = 108/157 (68.79%), Postives = 127/157 (80.89%), Query Frame = 3 
Query:  249 TPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXXXXXXXXXXXXEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVA 716
            T DFP+QK  G +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+LAK                EQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV CN +LVFSKLKEGRFPGEIEL+DL++
Sbjct:   42 TLDFPAQKSTG-VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFSKLKEGRFPGEIELRDLIS 197
[Close]
BLAST of CX671884 vs. ExPASy Swiss-Prot
Match: HSP6_HETGL (Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.309e-16
Identity = 45/145 (31.03%), Postives = 71/145 (48.97%), Query Frame = 3 
Query:  303 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXXXXXXXXXXXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSR 737
            V  +FC SC YR       ++L  ++PGID+   NYPP + + + A+                   FP LG+  P ++  + +NR  +    +L  N ++  LQS+GAFE+Y   + ++SKL+ GR P   EL   +   LA  R
Sbjct:   83 VKFSFCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCVVSGRSPFPTLGLETPTFFQWMLSNRLSAALMLFLFSNAIEGMLQSTGAFEIYIESERIWSKLESGRVPSPPELFQAIDSHLAIRR 227
[Close]
BLAST of CX671884 vs. ExPASy Swiss-Prot
Match: SELT_DROME (SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.075e-13
Identity = 46/148 (31.08%), Postives = 67/148 (45.27%), Query Frame = 3 
Query:  282 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXXXXXXXXXXXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 725
            G     T+   +C SC YR        +L  ++P I V   NY PP     L+K                   F  LG+  P W+  ++AN+  +    + +GN L++ L SSGAFE+  ND  V+SKL+ GRFP    L  ++   L
Sbjct:   37 GQNIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVWSKLQTGRFPSPEVLFQIIDNHL 184
The following BLAST results are available for this feature:
BLAST of CX671884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SELT_ARATH2.696e-5768.79SelT-like protein OS=Arabidopsis thaliana GN=At3g4... [more]
HSP6_HETGL2.309e-1631.03Putative esophageal gland cell secretory protein 6... [more]
SELT_DROME4.075e-1331.08SelT-like protein OS=Drosophila melanogaster GN=CG... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13G01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13G01-M1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671884 ID=CX671884; Name=CX671884; organism=Citrus sinensis; type=EST; length=825bp
TTTAGTCAGTCACAGTCGGTCTATTTTTCTTCTTCTTCGAATTGTTGTTT
TTCTTTCACAGACTCGTAAAATCCCAACAAAATCATAGTTTTAATCTACA
AATGGATCGGCTAAATATCCTTCTTCTGGGTCTCCCTCTCTTTCTTCTCT
GCAGCGACCTCTTAAATCTTTTCACTCCTCCGCCGCCGCCGCCGCCAAAA
TCCGCTTCCCACCACCACCATAAACCGCCTATAACTTCAGAAAACCTAAC
CCCAGACTTTCCTTCACAGAAAATTGTCGGAGGAATTGGGTATGGCAGTA
CTGTTAATATCAACTTTTGTGCTTCTTGCTCTTATAGGGGCACTGCAATA
ACAATGAAAAGGATGTTGGAGACTCAGTTTCCTGGAATTGATGTGGTCCT
TGCAAATTATCCCCCACCCCTGCCAAAGCGTCTACTTGCTAAAGTGGTGC
CTGCTGTTCAGATAGGGGTTATTGGGATCGTAGTGGCAGGCGAACAGATT
TTTCCGATGCTGGGAATGACACCACCTCCATGGTATTATTCGCTGCGTGC
CAATAGGTTTGGGTCCATAGCATCTACCTGGCTTATTGGAAACTTTTTGC
AGTCCTTCCTCCAAAGCTCTGGGGCTTTTGAAGTTTACTGTAATGATGAC
TTGGTCTTCTCTAAACTGAAGGAGGGGAGGTTTCCAGGCGAGATTGAGCT
AAAAGATCTTGTTGCCAAACAATTGGCTTCATCAAGACTTGTGGATGGTG
TTGGAAGTGTATGGTCCTAGTTCATTCACTGGACATTGAGGGTTGGAATC
AAAGGATTGACTGAGAGCCTTGTAC
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