CX053421

Overview
NameCX053421
Unique NameCX053421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053421 vs. ExPASy Swiss-Prot
Match: MAG1_SCHPO (DNA-3-methyladenine glycosylase 1 OS=Schizosaccharomyces pombe GN=mag1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13
Identity = 36/101 (35.64%), Postives = 60/101 (59.41%), Query Frame = -3
Query:  179 AEKYTDGIL-SDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPG---ALKMEEVCEKWKPYRSVGSWYMWR 469
            AE    G++ + E    + +  + + LT +KGIG W+V M +IFSL++ DV+P  DL +R G + L+ L ++P     LK  E+C    P+R+  +WY+W+
Sbjct:  115 AEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTKMYVLKHSEICA---PFRTAAAWYLWK 212          
BLAST of CX053421 vs. ExPASy Swiss-Prot
Match: YFJP_BACSU (Putative DNA-3-methyladenine glycosylase yfjP OS=Bacillus subtilis GN=yfjP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 30/95 (31.58%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  170 DGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLME 454
            +G LS   +  M D  + K L  ++GIG W+V   ++F L +P++ P+ D+G++  ++  + L + P    M  + ++W+PY S  S Y+WR +E
Sbjct:  193 EGTLSLSELPHMADEDIMKKLIKIRGIGPWTVQNVLMFGLGRPNLFPLADIGLQNAIKRHFQLDDKPAKDVMLAMSKEWEPYLSYASLYLWRSIE 287          
BLAST of CX053421 vs. ExPASy Swiss-Prot
Match: MAG2_SCHPO (Probable DNA-3-methyladenine glycosylase 2 OS=Schizosaccharomyces pombe GN=SPBC23G7.11 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 26/91 (28.57%), Postives = 55/91 (60.44%), Query Frame = -3
Query:  176 ILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRL 448
            I S   I +M +  + + L+ +KG+  W++ M+ IF+L + D++P  D  ++   +  +GL   P   ++E++ +  KPYR++ +WY+W++
Sbjct:  115 IPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQI 205          
The following BLAST results are available for this feature:
BLAST of CX053421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MAG1_SCHPO2.461e-1335.64DNA-3-methyladenine glycosylase 1 OS=Schizosacchar... [more]
YFJP_BACSU2.303e-1131.58Putative DNA-3-methyladenine glycosylase yfjP OS=B... [more]
MAG2_SCHPO2.303e-1128.57Probable DNA-3-methyladenine glycosylase 2 OS=Schi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_5H11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-5H11-O22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053421 ID=CX053421; Name=CX053421; organism=Citrus sinensis; type=EST; length=549bp
CTTTTTTTTTTTTTTGAAAAGACGAAGAAAAAATAAACACTGAGAATCTT
TGACAGTTTGCATACACCCGATGACCCGAAGCTAAGTTTGGTGCAGGAAC
AGAAACGAATTACGCAGCTTCAACGCTCGTGACGGCTGCTTTTGCGACAT
TTGGCAGAACTCCTTTGGCTTCCATTAACCTCCACATATACCAAGACCCA
ACAGACCGGTAAGGCTTCCACTTCTCACAGACCTCCTCCATTTTCAATGC
CCCCGGCAACTCTTTCAACCCATACAAAACCTGCAGGCCTTTCCTCACTC
CTAAATCGCCCACCGGCAACACATCCGGTTTGTGCAGTGAAAATATCATA
AACATGTGCACAGACCACGCTCCAATACCCTTCACACTCGTCAACATTTT
GAACATCGTCACATCGTCCATTTCTACAATTGACTCATCAGATAAAATCC
CATCTGTATATTTCTCGGCTTTGTAAGCGAGTTGCTGATAAAGGATGCTT
TTTGCGAGAGAGAGAAACGGCGATCGGGAGGACTCGAACGTCGGTGCCT
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