CX671848

Overview
NameCX671848
Unique NameCX671848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12269 contig Csv1_Contig12269:274..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671848 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.927e-33
Identity = 89/165 (53.94%), Postives = 99/165 (60.00%), Query Frame = -3
Query:  272 TPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQXXXXXXAQMD-----------KFDXXXXXXXXXXXSAMDLS-TGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSSTNFGLGEGLLWD 730
            TPEMAARAHDVAALSIKG +AILNFPELADS PRP SL+PRD+Q      A M+                           MDLS T SEEL EIVELPSLG+SYD  S+ L NEFVF DSVD  +Y PPW QS E ++Y  G+ P        NF  G GL WD
Sbjct:   82 TPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTTSFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEFVFYDSVDYCLYPPPWGQSSE-DNYGHGISP--------NF--GHGLSWD 235          
BLAST of CX671848 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.093e-27
Identity = 75/139 (53.96%), Postives = 87/139 (62.59%), Query Frame = -3
Query:  344 TPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQXXXXXXAQMD---KFDXXXXXXXXXXXSAMDL-------STGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQ 730
            +PEMAARAHDVAALSIKG SAILNFP+LA S PRP+SL+PRD+Q      A M+    F            S+  L       +TGSEEL EIVELPSLGSSYD   ++L NEF+F DS D W Y P W +     DYQ
Sbjct:   67 SPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSSSSLTFSSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYD-GLTQLGNEFIFSDSADLWPYPPQWSEG----DYQ 200          
BLAST of CX671848 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 69/173 (39.88%), Postives = 87/173 (50.29%), Query Frame = -3
Query:  308 TPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQXXXXXXAQMDKFD----------------------------XXXXXXXXXXXSAMDLSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQF----GVLPESSVFSS 730
            T EMA RAHDVAA+SIKG SAILNFPEL+  LPRP SL+PRDV+      A MD FD                                       ++++ ST S++L EIV+LPSLG+S +       NEFV  DS++  +Y P W    E E + +      L  SSVF S
Sbjct:   50 TAEMAMRAHDVAAMSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAALMD-FDTTAFRSDTETSETTTSNKMSESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLPSLGTSLNES-----NEFVIFDSLEDLVYMPRWLSGTEEEVFTYNNNDSSLNYSSVFES 216          
BLAST of CX671848 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18
Identity = 71/175 (40.57%), Postives = 87/175 (49.71%), Query Frame = -3
Query:  296 TPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQXXXXXXAQMD-------------------------KFDXXXXXXXXXXXSAMDLSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTP--PWFQSVEVEDYQF---GVLPESSVFSSTNFG 730
            TPEMAARAHD AAL+IKG SA+LNFPELA  LPRP S +PRDVQ      A MD                                       S+ + ++ +EELSEIVELPSL +SYD    E  +EFV+VDS     Y P  PW+ +     Y       +  +  F S+NFG
Sbjct:   74 TPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAAVAAAMDFSPSSSSLVVSDPTTVIAPAETQLSSSSYSTCTSSSLSPSSEEAASTAEELSEIVELPSLETSYD----ESLSEFVYVDSA----YPPSSPWYINNCYSFYYHSDENGISMAEPFDSSNFG 240          
BLAST of CX671848 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.440e-16
Identity = 62/158 (39.24%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  338 TPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQXXXXXXAQMD----------------------KFDXXXXXXXXXXXSAMDLSTGSE-----ELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQFG 730
            T EMAARAHDVAALSIKG+SAILNFPELAD LPRP SL+ +D+Q      A MD                      K +           S+   S+ S      EL +IVELPSL ++  Y       +    DS++G +  PPW  + E  D+++G
Sbjct:   57 TAEMAARAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHLQDDSTPLQTRCDTEKIEKWSSSSSSASSSSSSSSSSSSSMLSGELGDIVELPSLENNVKY-------DCALYDSLEGLVSMPPWLDATE-NDFRYG 206          
BLAST of CX671848 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 53/138 (38.41%), Postives = 72/138 (52.17%), Query Frame = -3
Query:  341 TPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQXXXXXXAQM-------DKFDXXXXXXXXXXXSAMDLSTGSEELSEIVELPSL-GSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQF 730
            T +MAARAHDVAAL+IKG+SA+LNFPELA   PRP S +P D+Q      A M       +K +                S   E L +IVELP++   SYD +S   R +  + +  D W+Y P      E+ ++ F
Sbjct:  110 TADMAARAHDVAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVEEKLLEKDEAPEAPPSSESSYVAAESEDEERLEKIVELPNIEEGSYD-ESVTSRADLAYSEPFDCWVYPPVMDFYEEISEFNF 246          
BLAST of CX671848 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = -3
Query:  599 TPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQ 730
            TPEMAARAHDVAAL+IKG SA LNFPELA  LPRP S  P+D+Q
Sbjct:   71 TPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQ 114          
BLAST of CX671848 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = -3
Query:  599 TPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQ 730
            T EMAARAHDVAAL+IKGNS  LNFPEL+  LPRP S +P+D+Q
Sbjct:  102 TAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQ 145          
The following BLAST results are available for this feature:
BLAST of CX671848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
DREB3_ARATH4.927e-3353.94Dehydration-responsive element-binding protein 3 O... [more]
TINY_ARATH3.093e-2753.96Ethylene-responsive transcription factor TINY OS=A... [more]
ERF43_ARATH1.178e-1839.88Ethylene-responsive transcription factor ERF043 OS... [more]
ERF37_ARATH2.625e-1840.57Ethylene-responsive transcription factor ERF037 OS... [more]
ERF42_ARATH1.440e-1639.24Ethylene-responsive transcription factor ERF042 OS... [more]
ERF36_ARATH7.903e-1538.41Ethylene-responsive transcription factor ERF036 OS... [more]
ERF39_ARATH3.108e-1177.27Ethylene-responsive transcription factor ERF039 OS... [more]
ERF35_ARATH6.923e-1172.73Ethylene-responsive transcription factor ERF035 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13E04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13E04-I7-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671848 ID=CX671848; Name=CX671848; organism=Citrus sinensis; type=EST; length=732bp
GTTTTAAATTGTACAGTTAGATTATTTATTGAAGAAGGTTACATAATTAA
TTAAAACTCTAGAAACAGAGAGGGCACGACAATAGACAATGTTCTAGCTA
TAGCCCTTCAAAGAAAAACCAAAAGGGCTACTAAAGCTCAAAATTAAGCC
AGAAACGAAAAACAAAAAAAGAAGCGAATTGAAAATTGAATACTTGACAT
GCACACATTCACAGACACAATTCACATTTACAATTTTCACAAAACATAGA
CAGATGAACAACATTTCAGGAATCCCACAACAAACCTTCTCCAAGTCCAA
AGTTAGTTGATGAAAAAACACTAGACTCTGGCAACACTCCGAATTGATAA
TCTTCAACTTCAACGCTTTGAAACCAAGGCGGCGTGTACATCCAACCATC
GACCGAGTCAACAAACACAAACTCGTTTCTCAACTCGGACGATTTGTAAT
CATAACTCGACCCCAAACTCGGCAGCTCAACGATCTCACTCAACTCTTCT
GACCCAGTTGACAAATCCATAGCAGAAACCAAAGATGACAGAGAAGATGA
AGACGAGGAGTCAAACTTGTCCATTTGAGCAGCCTTAGCAGCGGCGGCTT
GGACGTCACGTGGGGCGAGAGAGTTAGGACGTGGGAGCGAGTCAGCGAGT
TCTGGGAAGTTGAGGATTGCTGAGTTGCCCTTGATGCTCAAGGCAGCCAC
GTCATGCGCACGTGCGGCCATTTCGGGCGTGG
back to top