CX671844

Overview
NameCX671844
Unique NameCX671844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671844 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.949e-67
Identity = 127/245 (51.84%), Postives = 160/245 (65.31%), Query Frame = 3
Query:  126 TFIIKVQYDAKPSIFPTHKHWYEXXXXXXXXXXX--HTYDTVFHGFSAKLTPSEALRLKTLPHVLAVFSEQVRHLHTTRSPQFLGLKSSSDSAGLLLKESDFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSPRDSDGHGTHTASIAAGRYVSPASTLGYASGVAAGMAPKARLAVYKVCWNAGCYDSDILAAFDSAVS 854
            T+I+ +     PS F  H +WY+             +TY+   HGFS +LT  EA  L T P V++V  E    LHTTR+P FLGL   +     L  E+   SD+V+GV+DTGVWPE +S++D   GP+P  WKG C    +F A+ CNRKLIGARFF++GYEST G ++E+ E RSPRD DGHGTHT+S AAG  V  AS LGYASG A GMAP+AR+AVYKVCW  GC+ SDILAA D A++
Sbjct:   31 TYIVHMAKSQMPSSFDLHSNWYDSSLRSISDSAELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTAD---LFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLGGCFSSDILAAIDKAIA 272          
BLAST of CX671844 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.407e-48
Identity = 99/209 (47.37%), Postives = 132/209 (63.16%), Query Frame = 3
Query:  228 HTYDTVFHGFSAKLTPSEALRLKTLPHVLAVFSEQVRHLHTTRSPQFLGLKSSSDSAGLLLKESDFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSPRDSDGHGTHTASIAAGRYVSPASTLGYASGVAAGMAPKARLAVYKVCWNAGCYDSDILAAFDSAVS 854
            HTY   F+GF+ KLT  EA ++ ++  V++VF  ++  LHTTRS  FLG   +      + + S   S++V+GV+DTG+WPE  SF+D    P P KWKG C T+N+F    CNRK+IGAR +  G   + G +N       PRD++GHGTHTAS AAG  VS A+  G   G A G  P AR+A YKVCWN GC D+DILAA+D A++
Sbjct:   71 HTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPLT------VPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNF---RCNRKIIGARSYHIGRPISPGDVN------GPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIA 264          
BLAST of CX671844 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.577e-42
Identity = 93/209 (44.50%), Postives = 126/209 (60.29%), Query Frame = 3
Query:  228 HTYDTVFHGFSAKLTPSEALRLKTLPHVLAVFSEQVRHLHTTRSPQFLGLKSSSDSAGLLLKESDFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSPRDSDGHGTHTASIAAGRYVSPASTLGYASGVAAGMAPKARLAVYKVCW-NAGCYDSDILAAFDSAV 851
            ++Y   F+ F+AKL+P EA ++  +  V++V   Q R LHTT+S  F+GL  ++       +      D++IGV+DTG+ P+ +SF D  LGP P KWKG C    +F  T CN K+IGA++F        G      E RSP D DGHGTHT+S  AG  V+ AS  G A+G A G  P ARLA+YKVCW  +GC D DILA F++A+
Sbjct:   76 YSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAK------RHLKAERDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSCGPYKNF--TGCNNKIIGAKYFKHDGNVPAG------EVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAI 270          
The following BLAST results are available for this feature:
BLAST of CX671844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH3.949e-6751.84Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
CUCM1_CUCME2.407e-4847.37Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH2.577e-4244.50Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13E02-I3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671844 ID=CX671844; Name=CX671844; organism=Citrus sinensis; type=EST; length=854bp
TCTTCCTCAACAAACCACACGAAGCAATGTCTTCTCTTCTTCTCCTGTTC
TTCCTCCTCTGCACTACTACTTCATCTTCATCTTCCTCACCTTCAACTAA
TAAAAATGAAGCTGAAACCCCGAAAACATTCATTATCAAAGTCCAGTACG
ACGCAAAGCCCTCCATTTTCCCAACCCACAAGCACTGGTACGAGTCCTCT
CTCAGTTCCGCCTCCGCCACTCTCCTCCACACTTACGACACCGTTTTCCA
TGGCTTCTCCGCTAAGCTCACCCCTTCTGAAGCCCTCCGCCTCAAAACCT
TACCCCACGTCCTCGCCGTTTTCTCCGAACAGGTCCGCCACCTGCACACC
ACTCGCTCCCCTCAGTTCCTCGGCTTAAAATCCTCCTCGGACAGCGCCGG
CCTCCTCTTGAAAGAATCCGACTTCGGCTCTGACCTCGTCATCGGCGTCA
TTGACACCGGCGTCTGGCCCGAAAGACAAAGCTTCAACGACCGAGATCTC
GGCCCTGTGCCCCGCAAATGGAAAGGCCAATGCGTTACCACCAACGACTT
CCCCGCTACCAGCTGCAACCGTAAACTCATTGGCGCCCGGTTCTTTTCCC
AGGGTTATGAGTCTACTAACGGCAAAATGAACGAGACCACTGAGTTTCGG
TCTCCCCGAGATTCGGACGGCCATGGTACTCACACGGCGTCTATCGCCGC
CGGCAGGTACGTGTCTCCGGCCTCCACTTTGGGTTATGCAAGTGGTGTTG
CTGCTGGTATGGCTCCTAAAGCGAGACTTGCTGTTTATAAAGTGTGTTGG
AATGCTGGCTGTTACGATTCTGATATTTTAGCTGCTTTTGATAGTGCTGT
TTCG
back to top