CX671837

Overview
NameCX671837
Unique NameCX671837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:269..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 263.848 bits (673), Expect = 6.633e-70
Identity = 137/158 (86.71%), Postives = 142/158 (89.87%), Query Frame = -2
Query:  259 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 732
            KEKKLRVEDALNATKAA         GCTLLRL+ KVDAIK TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEP +P GNPMDNSGYGY
Sbjct:  444 KEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP-VPVGNPMDNSGYGY 600          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 3.292e-69
Identity = 138/157 (87.90%), Postives = 140/157 (89.17%), Query Frame = -2
Query:  262 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 732
            KEKKLRVEDALNATKAA         GCTLLRL+ KVDAIK+TL NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLSSDN KYGYNAATG YEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE A P GNPMDNSGYG
Sbjct:  438 KEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPESA-PVGNPMDNSGYG 593          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.811e-66
Identity = 129/158 (81.65%), Postives = 140/158 (88.61%), Query Frame = -2
Query:  259 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 732
            KEKKLRVEDALNATKAA         GCTLLRL+ KVDAIK+TL+NDE+KVGA+IV+RALCYPLKLIAKNAGVNGSVV+EKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFL SD VVVEIKEPE A P  NPMDNSG+GY
Sbjct:  343 KEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAKVDAIKDTLENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPE-AAPLANPMDNSGFGY 499          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.898e-62
Identity = 124/143 (86.71%), Postives = 128/143 (89.51%), Query Frame = -2
Query:  304 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP 732
            KEKKLRVEDALNATKAA         GCTLLRL+ KVDAIK  LDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEP
Sbjct:  444 KEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP 586          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: RUBC_CHLRE (RuBisCO large subunit-binding protein subunit beta-2 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.076e-47
Identity = 104/151 (68.87%), Postives = 118/151 (78.15%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS-DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 732
            KEKKLRVEDALNATKAA         GCTLLRLS KVD+IKETL N+E+K+GADI+KRAL YP+KLIA NAG NGSVV ++V+ + D   YGYNAAT  +EDLM AGIIDPTKVVRC LE+A SVAKTFL++D VV EI  KE  PA  AG
Sbjct:  105 KEKKLRVEDALNATKAAVEEGIVIGGGCTLLRLSQKVDSIKETLSNEEQKMGADIIKRALSYPIKLIANNAGTNGSVVMQRVMDNIDQPYYGYNAATDTFEDLMEAGIIDPTKVVRCSLENAVSVAKTFLLADVVVTEIPEKEKAPAPAAG 255          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.066e-43
Identity = 96/159 (60.38%), Postives = 119/159 (74.84%), Query Frame = -2
Query:  259 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS-DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 732
            KEKKLRVEDALNAT+AA         GCTLLRLS KVD IK  + + E+++GADI+KRALCYP+KLIA+NAGVNGSVV  +V+ + D   YGYNAAT ++E+LM  GIIDP+KVVRC +E+A SVAKTFL++D VV E+KE E A    NP+     G+
Sbjct:  274 KEKKLRVEDALNATRAAVEEGVVPGGGCTLLRLSEKVDVIKRRMTDPEQQMGADIIKRALCYPIKLIAQNAGVNGSVVMNEVMKNLDRPHYGYNAATDSFENLMETGIIDPSKVVRCSMENAVSVAKTFLLADVVVTELKEIE-AGAKPNPVAPGAAGF 431          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.633e-34
Identity = 85/155 (54.84%), Postives = 107/155 (69.03%), Query Frame = -2
Query:  268 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 732
            K++KLR+EDALNATKAA         G TL+ L+ KVD IK+  D +EEK+GADIVKRAL  PL+ IA NAGV GSV+  +V  SD +  GYNAATG +EDL+AAGIIDP KVVR  L++A+S+A   L ++ +VVE  E + A PA   M   G
Sbjct:  388 KDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSDFNT-GYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKAAAPADAGMGGMG 540          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.865e-34
Identity = 84/155 (54.19%), Postives = 105/155 (67.74%), Query Frame = -2
Query:  268 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 732
            K++KLR+EDALNATKAA         G TL+ L+ KVD IK+  D +EEK+GADIVKRAL  PL+ IA NAG  GSV+  +V  SD    GYNAATG +EDL+AAGIIDP KVVR  L++A+S+A   L ++ +VVE  E + A PA   M   G
Sbjct:  388 KDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIGADIVKRALEAPLRQIADNAGAEGSVIVSRVKDSD-FNIGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKSAAPADAGMGGMG 540          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.865e-34
Identity = 80/146 (54.79%), Postives = 102/146 (69.86%), Query Frame = -2
Query:  295 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 732
            K++KLR+EDALNATKAA         G TL+ LS KV+ +K +L+N+EEK+GADIV+RAL  PL  IA N+GV GSV+ EKV S+D    GYN  TG YEDL+AAGI+DP  VVR  L++A S+A   L ++ VVVE  E + A P
Sbjct:  388 KDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTD-FSVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAVVVEKPEKKGAAP 532          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.229e-33
Identity = 79/155 (50.97%), Postives = 103/155 (66.45%), Query Frame = -2
Query:  268 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 732
            K +KLR+EDALNAT+AA         G TLL L+  + +++ +L   +EK+G +IV RAL  PL+ IA NAG  GSVV EK+   D   +GYNA TG YEDL+A+GI+DP KVVR  L+ A+SVA   L ++ +VV+  EPEPAMPAG  M   G
Sbjct:  389 KNRKLRIEDALNATRAAIEEGVVPGGGTTLLHLASALTSLQASLTVADEKLGVEIVARALEAPLRQIADNAGAEGSVVVEKLRDKD-FNFGYNALTGQYEDLVASGILDPAKVVRSALQDAASVASLILTTEVLVVDQPEPEPAMPAGGDMGGMG 542          
The following BLAST results are available for this feature:
BLAST of CX671837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_ARATH6.633e-7086.71RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA3.292e-6987.90RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE5.811e-6681.65RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_BRANA3.898e-6286.71RuBisCO large subunit-binding protein subunit beta... [more]
RUBC_CHLRE2.076e-4768.87RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_CHLRE1.066e-4360.38RuBisCO large subunit-binding protein subunit beta... [more]
CH602_ANAVT2.633e-3454.8460 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH602_ANASP5.865e-3454.1960 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
CH601_TRIEI5.865e-3454.7960 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH602_SYNP62.229e-3350.9760 kDa chaperonin 2 OS=Synechococcus sp. (strain A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D10-G19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671837 ID=CX671837; Name=CX671837; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTGAGCAAAATAAAATTTCTTTCACTCAAAAAGTT
CAAAATCATTGCAATTGTACATCTAATTGCAAATTAATACGAGCCGTACT
CTGGCAAGCTATCCTCACCAAAATCCATAAACTCTACTAAGTCGAGTAAT
TGAATTTACAAGAAGAAAAAAACCCAACGCTGTCAAACTGAAAGATAGTT
GCTATAACGAAGTCAGAACCTTATTTGCTTGCCTCCCGTGACCTTGTTAA
TTAGCTTAATATCCATATCCTGAGTTGTCCATAGGGTTACCCGCAGGCAT
AGCGGGTTCAGGCTCCTTGATCTCAACCACCACACAGTCGGACATCAAGA
AGGTTTTTGCCACCGAGGAAGCATGCTCCAAGCAACATCTAACCACCTTG
GTAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTTGC
AGCATTGTATCCATATTTATGATTGTCACTTGAAAGCACCTTCTCGCTGA
CCACACTTCCATTAACACCGGCATTTTTGGCAATTAATTTCAGTGGGTAG
CACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTATC
AAGGGTTTCCTTAATGGCATCCACCTTAAATGAAAGTCTCAGTAGAGTAC
ATCCGCCACCAACTACGATACCTTCCTCAACTGCAGCCTTTGTTGCATTA
AGAGCATCTTCGACTCTCAACTTCTTCTCTTTA
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