EY664520

Overview
NameEY664520
Unique NameEY664520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664520_ssr172 microsatellite EY664520_ssr172:172..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY664520 vs. ExPASy Swiss-Prot
Match: TRXX_ARATH (Thioredoxin-X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.622e-43
Identity = 101/188 (53.72%), Postives = 126/188 (67.02%), Query Frame = 1
Query:   61 MDIVFSNSTLLFRQQPLVAPVRTVT-GTHRQQNIIXXXXXXXXXXKNQLLFGSRTNLSLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDS 621
            MD + S+ST+L R   L  PVR+ +  T      +             LL  S      +  ++S+      +RCG   GI EI ESEF +TVL+S +PVLVEFVA WCGPC+L+ PA+E L+QEYGD+LT+VKIDHDANP+LI E+KVYGLP  ILFK+G+EVP SRREGAITK KLKEYID LL+S
Sbjct:    1 MDSIVSSSTILMRSY-LTPPVRSCSPATSVSVKPLSSVQVTSVAANRHLLSLSSGARRTRKSSSSV------IRCG---GIKEIGESEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPHFILFKDGKEVPGSRREGAITKAKLKEYIDGLLNS 178          
BLAST of EY664520 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 2.552e-22
Identity = 53/112 (47.32%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  289 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDSS 624
            S G+  IT++EF + VLK+E+PVLV F A+WCGPC+L++P +   A  Y DRL VVK++ D NP  +++YKV G+P L L K G+++ +S  EG I+K KL  ++DT L+++
Sbjct:    2 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVK-GEQILDS-TEGVISKDKLLSFLDTHLNNN 111          
BLAST of EY664520 vs. ExPASy Swiss-Prot
Match: THIO_THIFE (Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.685e-21
Identity = 48/109 (44.04%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  289 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 615
            S  I  +++  F   VLKS +PVLV+F A WCGPC+++AP +E +A EY DRL V K + D NP    +Y + G+PTL+LFK G+   E+ + GA++K +L  ++D+ L
Sbjct:    2 SDAILYVSDDSFETDVLKSSKPVLVDFWAEWCGPCKMIAPILEEIADEYADRLRVAKFNIDENPNTPPQYAIRGIPTLLLFKAGK--LEATKVGALSKAQLTAFLDSQL 108          
BLAST of EY664520 vs. ExPASy Swiss-Prot
Match: THIO2_SYNY3 (Thioredoxin-like protein slr1139 OS=Synechocystis sp. (strain PCC 6803) GN=slr1139 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.072e-20
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1
Query:  298 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLD 618
            + EIT++EF        +PVLV F A+WCGPCRL+APA++ +A++YGD+L V+K++ D NP  + + KV G+P L LFKN + V     EGAI K KL E +   LD
Sbjct:    3 LLEITDAEFEQETQGQTKPVLVYFWASWCGPCRLMAPAIQAIAKDYGDKLKVLKLEVDPNPAAVAQCKVEGVPALRLFKNNELV--MTHEGAIAKPKLLELLKEELD 107          
BLAST of EY664520 vs. ExPASy Swiss-Prot
Match: THIO_SHIFL (Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.119e-20
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  289 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 615
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of EY664520 vs. ExPASy Swiss-Prot
Match: THIO_SALTY (Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.119e-20
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  289 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 615
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of EY664520 vs. ExPASy Swiss-Prot
Match: THIO_SALTI (Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.119e-20
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  289 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 615
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of EY664520 vs. ExPASy Swiss-Prot
Match: THIO_ECOLI (Thioredoxin-1 OS=Escherichia coli (strain K12) GN=trxA PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.119e-20
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  289 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 615
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of EY664520 vs. ExPASy Swiss-Prot
Match: THIO_ECOL6 (Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.119e-20
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  289 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 615
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of EY664520 vs. ExPASy Swiss-Prot
Match: THIO_ECO57 (Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.119e-20
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  289 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 615
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
The following BLAST results are available for this feature:
BLAST of EY664520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
TRXX_ARATH2.622e-4353.72Thioredoxin-X, chloroplastic OS=Arabidopsis thalia... [more]
THIO2_ANASP2.552e-2247.32Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO_THIFE3.685e-2144.04Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA P... [more]
THIO2_SYNY31.072e-2047.66Thioredoxin-like protein slr1139 OS=Synechocystis ... [more]
THIO_SHIFL3.119e-2042.20Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV... [more]
THIO_SALTY3.119e-2042.20Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE... [more]
THIO_SALTI3.119e-2042.20Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=... [more]
THIO_ECOLI3.119e-2042.20Thioredoxin-1 OS=Escherichia coli (strain K12) GN=... [more]
THIO_ECOL63.119e-2042.20Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 ... [more]
THIO_ECO573.119e-2042.20Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-067-E02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664520 ID=EY664520; Name=EY664520; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGAATTCAAAAAGAAAAGAAAATGCTCTAAAAATCTTTAAT
CACTTGCAAAATGGATATCGTCTTCTCCAACTCCACTTTATTGTTCAGAC
AACAACCACTGGTTGCTCCTGTTCGTACAGTTACTGGGACCCACAGGCAA
CAGAACATCATCACCAGCGCTACAACAACAACAACGTCGTCAAAGAATCA
GCTATTGTTCGGGTCTCGAACGAACCTCTCACTAAAGTCTTATAATAATT
CGCTTCCCAAGTTGGCAATACGCGTACGCTGCGGTGCTAGCAGTGGCATA
ACGGAGATTACCGAAAGTGAGTTCCCAAACACGGTCTTGAAATCTGAGCG
TCCGGTTCTTGTCGAGTTCGTGGCCAATTGGTGCGGTCCTTGCCGCTTGG
TTGCTCCCGCCGTCGAATGGCTCGCCCAGGAATACGGAGACAGATTGACT
GTCGTAAAGATTGATCATGACGCAAACCCACAACTAATAGAGGAATACAA
AGTTTATGGATTGCCGACCTTGATTCTCTTCAAGAATGGACAGGAAGTTC
CGGAAAGCAGGAGGGAAGGTGCAATTACTAAGTTGAAGCTTAAAGAGTAT
ATTGATACTCTTTTAGATTCATCTCAGTGGCTTAGCCCTCTTTTGACATG
CTCAGCAAATATGCTCGGTCTTCACAGATTTTGACATCATTGGCAAAGAC
GAATATGGGTAAATATTTACTTTTTCCTTATGAAACCTGGATCATTCGGT
ACAGAACCCGTGGATGGATTCAATTGNATATTTTGGATCCATGGAACAGA
ATTATCATACTAATTTCTGGATATCCAACCGGCCCCAATTGGTTTTTCAT
TTCTTTAAAAAAAAAAAAAAAAAAAGGGCGGCCCTTTAAAGGTACAAATT
TAACTACCCGGAATTG
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