CX671744

Overview
NameCX671744
Unique NameCX671744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671744_ssr93 microsatellite CX671744_ssr93:93..104. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX671744 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.154e-13
Identity = 45/143 (31.47%), Postives = 73/143 (51.05%), Query Frame = -3 
Query:  194 CRYINTDDYEGGFEPSDIENLISNVETNYASWASSFPRLVVDTKDAPSV-EKFENCLKRMRHEFALPLAKTVFYSDEREILDKVETPCTIVQPSNDAVVPNSVAYYMQEKMKGKSTVEIIEADGHFPQLTAHLQLIDVLNKVL 619
            C   +  +Y GGFE   +  L+  +E NY  WA+ F   V++  D P + E+ E+         A   AK  F+SD RE L KV  P  I+Q ++D + P +V  YM + +   S+++ +EA GH P ++   + I ++   L
Sbjct:  124 CYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLP-YSSLKQMEARGHCPHMSHPDETIQLIGDYL 265
The following BLAST results are available for this feature:
BLAST of CX671744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU2.154e-1331.47Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12H07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H07-P14-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671744 ID=CX671744; Name=CX671744; organism=Citrus sinensis; type=EST; length=915bp
TGAATCATATCAGTTTATAATTCTAGAATCAACTCAAAAAAGGATTGCAA
ATCACGACTACTTAATTTAATCACAACAAAATAATTACAAACAACAAACA
AACACTCAAAAGGCCATCCAGACAAGCACGATTGGTGGCCTTGCAATTAT
TTGTATATCTTAGTAATTAATAATTCATTAAACATCAAAAGCCTAACACT
TTATTCAACACATCAATAAGCTGAAGATGAGCAGTAAGCTGCGGGAAATG
TCCATCGGCCTCTATGATCTCCACCGTTGATTTTCCCTTCATCTTCTCCT
GCATGTAGTAAGCAACTGAGTTCGGCACAACAGCGTCGTTACTGGGCTGG
ACAATAGTGCATGGTGTCTCGACCTTGTCGAGAATCTCTCTTTCGTCGCT
ATAAAACACAGTTTTGGCCAAAGGAAGAGCAAATTCATGTCTCATTCTTT
TCAAGCAGTTTTCAAATTTCTCGACCGAGGGAGCATCTTTAGTATCCACA
ACAAGACGTGGGAAGCTTGAAGCCCAGCTAGCATAATTGGTTTCTACATT
TGAGATGAGATTTTCAATATCCGAAGGTTCAAACCCACCTTCATAATCAT
CTGTGTTGATGTACCTACACATAAATTTGCAAGATAAATTTATAAGATCT
CGTTTGCAGCAAATAAACAGGAAAAAAAAATGGACCAAATAGTTATATAA
TAATTAAGAGATAGATTATTATTTTTCACAATCACAAATAAGCTTAAGCT
AAGAAGCAAAAGAACCAGTCCAAAAATTAAGGAACTTGTTTGCTAATATT
AAGCTTGCTAATGATTGAGGACACTAATACTTGAACCATGCGTTTAGAAC
TTCCATTGTCCACACAATTGAAGCAGAAGATAGAGAAGCCGGCAATATCT
TTAACTAGATATCTT
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