CX671730

Overview
NameCX671730
Unique NameCX671730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5089 contig Csv1_Contig5089:1..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671730 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.942e-45
Identity = 92/126 (73.02%), Postives = 103/126 (81.75%), Query Frame = -1
Query:  216 MASLATIAAVQPVT-IKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 590
            MAS ATIAAVQP + +KGLGGSSL G KL +KP+RQ+ +PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR           GS L Y SA+++GD+
Sbjct:    1 MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSASSTGDV 126          
BLAST of CX671730 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.183e-44
Identity = 91/126 (72.22%), Postives = 101/126 (80.16%), Query Frame = -1
Query:  216 MASLATIAAVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 590
            MAS ATIAAVQP   +KGLGGSSLAG KL +KP+RQ+ + KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR           GS L Y SA ++GD+
Sbjct:    1 MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANSTGDV 126          
BLAST of CX671730 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.319e-44
Identity = 89/126 (70.63%), Postives = 102/126 (80.95%), Query Frame = -1
Query:  216 MASLATIAAVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 590
            MASLAT+AAV+P   IKGLGGSSLAG KL++KP+R + +PKS +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR           GS L Y SAT++G++
Sbjct:    1 MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSATSTGEV 126          
BLAST of CX671730 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.625e-43
Identity = 86/125 (68.80%), Postives = 99/125 (79.20%), Query Frame = -1
Query:  216 MASLATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 590
            MASLAT+AAVQP T+KGL GSS+AGTKL +KP RQ+ +  + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKR           GS L Y SA A  D+
Sbjct:    1 MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDV 125          
BLAST of CX671730 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.441e-36
Identity = 83/126 (65.87%), Postives = 98/126 (77.78%), Query Frame = -1
Query:  216 MASLATIAAVQPVTIKGLGGSSLAGTKLTV-KPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 590
            MASLA ++ V+PV IKGL GSS++G KL V +P+ +++R    +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR           GS LAY SA+AS D+
Sbjct:    1 MASLAAVS-VKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSASASPDL 123          
BLAST of CX671730 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.476e-36
Identity = 78/123 (63.41%), Postives = 92/123 (74.80%), Query Frame = -1
Query:  216 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 581
            +A++ AVQPV +KGL GSS++G KL V+P+ + L R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR           GS +AY SA+AS D+
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123          
BLAST of CX671730 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.476e-36
Identity = 78/123 (63.41%), Postives = 92/123 (74.80%), Query Frame = -1
Query:  216 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 581
            +A++ AVQPV +KGL GSS++G KL V+P+ + L R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR           GS +AY SA+AS D+
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123          
BLAST of CX671730 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.301e-34
Identity = 74/124 (59.68%), Postives = 91/124 (73.39%), Query Frame = -1
Query:  216 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 581
            +A++ AVQP  +KGL GSS++G KL V+P+   +   + +A   AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKR           GS +AY SA+AS D+
Sbjct:    1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASASPDL 124          
BLAST of CX671730 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.313e-13
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  336 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 443
            KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct:    1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36          
The following BLAST results are available for this feature:
BLAST of CX671730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSAH_BRARA4.942e-4573.02Photosystem I reaction center subunit VI, chloropl... [more]
PSAH2_ARATH4.183e-4472.22Photosystem I reaction center subunit VI-2, chloro... [more]
PSAH1_ARATH9.319e-4470.63Photosystem I reaction center subunit VI-1, chloro... [more]
PSAH_SPIOL4.625e-4368.80Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_MAIZE1.441e-3665.87Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSJ5.476e-3663.41Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSI5.476e-3663.41Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_HORVU2.301e-3459.68Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_PEA1.313e-1391.67Photosystem I reaction center subunit VI (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12G11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12G11-N22-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671730 ID=CX671730; Name=CX671730; organism=Citrus sinensis; type=EST; length=794bp
TTTTTTTTTTTTTTTTTGAATTTTCAATTGAAGCAAATATATTGGCATTA
ATAACAAAGGAAGTCTTAAGTAGGATGTTGGACAAACCTACAGGTTTACA
ATAACAAGAAGATACATACAATGAAAAGTTAAAAATAGGAGGATTGAAAA
CTAATTTAGATCTTGCCACGTGGTCCGAGCTTTGGTGGAAGTTGAGGGCC
CTTCTTGATTGGGAGAATGTCACCACTAGCTGTAGCACTGAAGTAAGCAA
GGGTTGAACCTCCTCCCAATATCAAGAACTTGAGCAATAATCCTCTCTTG
GTGAATGGAGCTGCAAATGTCTCAAAGAACTTGCTCTGAAGAGAGTTGTA
CGGTGAAGGAGCATCTGATCCGTACAAGTCCCACTGGCCCGTAGTGTTGC
CCAAATCCTCCAAATCAAAGTACACACTCTTATCACCATACTTAGCCACT
ACAGCACCAGCCTTGAAGCTTTTGGGTCTCAAATTCTGGCGAGTTGGCTT
GACGGTGAGCTTAGTTCCAGCAAGAGAGCTGCCTCCAAGGCCTTTGATGG
TGACTGGTTGCACAGCAGCTATGGTTGCAAGAGATGCCATGGCCTTGGTT
TGTTGTAAATTCTTGACTTGCTTACTTGAAGCCTCGGATGAAGGGCAAAA
AGTTTCAGTTTCGAGGTATAATTAGCATTGACGATGATGAAGATGTGGGG
TGTTCTGAAATGGATAGTGATTCCTCTTCTAGCAAAAGTTGTCCTGCTCC
TGACCATGCTAATAAATTTGAGGACTTGGGCGATGATGAATGTC
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