CX671727

Overview
NameCX671727
Unique NameCX671727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10848 contig Csv1_Contig10848:118..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 6.105e-75
Identity = 139/242 (57.44%), Postives = 167/242 (69.01%), Query Frame = 2
Query:   77 MPEKITAENILDNLVETISDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFLSKIPKGKF 802
            MP+K   E+++ +LV+  ++ VQK K               RFNRLF RQKP+HH+LGGGKSADVLLWRNKKISASVLMGATAIWVLFEW+N+HFL++VC+AL+LGM+AQF W N SG  NRS S+VPR VLP + FA +G  V   VN  L  LQD+AC G LKQ             +GS CN LTVLYIGFV AHT+PVLYE++ED+VD             YKKLD+GFLS+IP GKF
Sbjct:    1 MPDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQEDSVSS-RFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIPSGKF 241          
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.162e-41
Identity = 84/194 (43.30%), Postives = 117/194 (60.31%), Query Frame = 2
Query:  209 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFLSKIP 790
            R+FGR+KPVH +LGGGK ADV LWR+KK+S +VL  ATAIWVLFE + YH L+++C   +L +   F W N   L N+++ ++P   +P E F  + +++   +N+A  +L+ IA G  LK+             +G+W N LT++YI FV  HT+P+LYEKHEDKVD             Y   D   LSKIP
Sbjct:   51 RMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIP 244          
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.416e-41
Identity = 87/194 (44.85%), Postives = 114/194 (58.76%), Query Frame = 2
Query:  209 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFLSKIP 790
            RLFGR+KPVH +LGGG  ADV LWR+KK+SASVL  ATAIWVLFE + YHFL++VC  L+  + A F   N     N++  K+P   +  E F  I + +   +N+A  +L+ IA G  LK+             +G+W N LT++YI FV  HT+P+LYEKHEDKVD             Y   D   LSK+P
Sbjct:   51 RLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLP 244          
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.053e-37
Identity = 76/196 (38.78%), Postives = 108/196 (55.10%), Query Frame = 2
Query:  209 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFLSKIPKG 796
            RLFGR++PVH +LGGGK AD+ +W+NKK+S  VL GATA WV+FE + YH LT++C  +++ +   F W N +   N+S  K+P   +P E    + + +   +N     L++IA G  LK+             +G   N LT+ YI  V   T+P+ Y+K+EDKVD             Y  LD   LSKIP G
Sbjct:   72 RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLG 267          
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.470e-36
Identity = 80/202 (39.60%), Postives = 110/202 (54.46%), Query Frame = 2
Query:  209 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLD----SGFLSKIPKGKF 802
            RLFGR++P+H L GGGK AD+ LWRNKK+S  VL  AT  W+LFE L Y+ LT+     +L +   F W + S   ++S   +P   +P +V   + + +   +N    +L+DIA G  LK+             +GS CN LT++YI  V   T+PVLYEK+EDKVD             Y + D    S  +SKIPKG F
Sbjct:   47 RLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKVMSKIPKGAF 248          
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.586e-36
Identity = 71/196 (36.22%), Postives = 109/196 (55.61%), Query Frame = 2
Query:  209 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFLSKIPKG 796
            RLFGR++PVH +LGGGK AD+ +W++KK+S  V  GAT  WVLFE + YH LT++C  +++ +   F W N +   ++S  K+P   +P E    + + +   +N  +  L++IA G  +K+             +G   + LT+ YI  V   T+P+ Y+K+EDKVDS            Y  LD+   SKIP+G
Sbjct:   68 RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRG 263          
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.625e-35
Identity = 87/242 (35.95%), Postives = 117/242 (48.35%), Query Frame = 2
Query:   98 ENILDNLVETI-----SDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFL----SKIPKG 796
            E+IL+ +VE I     S  +                   +  RLFGR+KPVH +LGGGK AD+ LWRNKK+S  VL   TA WVLFE   YH L  +C   +  + A F W N     ++S   +P   +P +    + + +   +N  L LL++IA G  +K+             IGS  N LT+ Y   V   T+PVLYEK+EDKVD+            Y  LD   L    SKIP+G
Sbjct:    9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRG 250          
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.004e-34
Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 2
Query:  209 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFLSKIPKG 796
            +LF RQ+ +H + GGGK AD+LLWR  KI+A++++G + +W L E + Y+F+T++C A +  ML  F W   S   N     +P  VL    F  +  +     N+ L  L D+ACG                  IG++ N + +L+IGFV+  TLPV+YE +ED VD+            YKK+D+  LSKIP+G
Sbjct:   22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRG 217          
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.056e-30
Identity = 69/194 (35.57%), Postives = 104/194 (53.61%), Query Frame = 2
Query:  209 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFLSKIP 790
            R+FGR++P+H +LGGGK ADVLLWR+KK++  +L   T IW+LF +     LT +C   +L +L  F W   S   N+S   +    +P +      + +   +N A   L+ IA    +K              IG+W + L++LYI FV  HT+P+LYEK+ED++D             Y+  ++ FLSKIP
Sbjct:   53 RMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLW---SNALNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLSKIP 243          
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.795e-25
Identity = 59/193 (30.57%), Postives = 97/193 (50.26%), Query Frame = 2
Query:  209 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFLSKI 787
            RL GRQ  VH  +GGGK+AD+LLWR + +S  V++ +T  W++FE+    FL++    L++ ++  F    +S   NR    +P  VL  E+  +   +    +N  L +  D+  G   +              IGS+ +L T+LYIG + + T+P LY K++ KVD             YK +D   +S++
Sbjct:   24 RLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRL 216          
The following BLAST results are available for this feature:
BLAST of CX671727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLH_ARATH6.105e-7557.44Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH1.162e-4143.30Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH4.416e-4144.85Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH5.053e-3738.78Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.470e-3639.60Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH5.586e-3636.22Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH1.625e-3535.95Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH4.004e-3436.73Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH2.056e-3035.57Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLP_ARATH5.795e-2530.57Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12G09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12G09-N18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671727 ID=CX671727; Name=CX671727; organism=Citrus sinensis; type=EST; length=804bp
ATCTTCACGGACACAACTCCAATCATCTACTCAGCAGACCCCATTTTTTT
TCCTTTTTTCTTGAAAGATTGGAAGAATGCCAGAGAAAATAACAGCAGAG
AACATTTTGGACAACCTTGTGGAAACCATTTCAGATAAGGTTCAAAAGCA
GAAAGCTGTATCATTTTTTGAGGAAGAGACATCAAGCTCAGTCACTGCTC
GTTTCAATCGGCTGTTCGGACGCCAGAAACCTGTCCACCATCTTTTGGGC
GGTGGAAAATCTGCTGATGTTTTGTTATGGAGGAACAAGAAGATATCAGC
CAGTGTATTAATGGGTGCAACAGCAATTTGGGTGCTCTTTGAATGGCTTA
ACTACCATTTTCTGACCATTGTATGCTTTGCTTTGGTCCTTGGCATGCTT
GCTCAGTTTTTTTGGGTAAACATTTCGGGCTTATTTAACAGATCAGCATC
AAAAGTTCCCCGCTTTGTTCTGCCTCCAGAGGTATTTGCTAACATTGGCA
CGACAGTTTGTGCTAATGTTAATGAAGCTCTGGGGCTACTTCAGGACATT
GCATGTGGAGGAAAACTGAAACAACTTCTTGTGGCTGTAGCAAGCTTGTG
GGTTGCTGCTGTGATAGGGAGCTGGTGTAACCTTTTGACCGTTCTATATA
TTGGTTTTGTTGCTGCCCATACATTACCAGTCCTGTATGAGAAGCATGAA
GATAAAGTTGACAGCTTTCTGAACAATGTCTTCCAGCAGCTCCAGAATCA
GTACAAGAAGCTTGATTCAGGTTTCCTCAGCAAAATCCCCAAGGGCAAGT
TCAA
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