CX671675

Overview
NameCX671675
Unique NameCX671675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671675 vs. ExPASy Swiss-Prot
Match: TOC33_ARATH (Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.594e-57
Identity = 107/166 (64.46%), Postives = 132/166 (79.52%), Query Frame = -3
Query:  294 VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKWIEGAIKSDIAKDKKP 791
            VD+LD+Q++ A+T TFGK+IW K+LLVLTHAQ  PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V   ENSGRCSKN+ DEK LPNG AWIP LVK ITDVATN+ K+I VDKK++DGS SDDKGK  IP +IG Q+LI+K I+GAI++DI    KP
Sbjct:  131 VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQYLIVKMIQGAIRNDIKTSGKP 296          
BLAST of CX671675 vs. ExPASy Swiss-Prot
Match: TOC34_ARATH (Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 4.435e-49
Identity = 94/171 (54.97%), Postives = 129/171 (75.44%), Query Frame = -3
Query:  282 VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQW-LILKWIEGAIKSDIAKDKKPY*EL 791
            VDDLDRQ++ A+T  FGK+IW+KS LVLTHAQ  PPDGLNY+ + SKRS+ALLK I+ GA L K + + +++PV LVENSGRC KNE+DEKILP G +WIP L   IT+++ N +K+I VDKKL++G   +++GK  IP +   Q+ L++K +  AIKSD++++ KP  EL
Sbjct:  133 VDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSNALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKILPCGTSWIPNLFNKITEISFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKPAWEL 303          
BLAST of CX671675 vs. ExPASy Swiss-Prot
Match: TOC34_PEA (Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.875e-48
Identity = 95/167 (56.89%), Postives = 125/167 (74.85%), Query Frame = -3
Query:  294 VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLIL-KWIEGAIKSDIAKDKKP 791
            VD+LD+ + KA+T +FGK IW K+++ LTHAQ  PPDGL YD + SKRS+ALL+ +R GA L K + +   +PV L+ENSGRC+KN++DEK+LPNG AWIP LV+ IT+VA NKS+SI VDK LIDG   + +GK+WIP +  LQ+L L K IE  I+ DIA + KP
Sbjct:  134 VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAKPIEALIRRDIATETKP 299          
BLAST of CX671675 vs. ExPASy Swiss-Prot
Match: TC120_ARATH (Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  480 DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLV 788
            D  D  +++ +T  FG  IW  +++ LTHA   PPDG N     YD++ ++RS  + + IR  AG  +        PV+LVEN   C  N   +++LPNG  W P L+
Sbjct:  555 DSGDMPLLRTITDVFGPSIWFNAIVGLTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMR-----LMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLL 657          
BLAST of CX671675 vs. ExPASy Swiss-Prot
Match: TC132_ARATH (Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.663e-12
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  480 DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLV 788
            D  D  +++ ++  FG  IW  +++ LTHA   PPDG N     YD++ ++RS  + + IR  AG  +        PV+LVEN   C  N   +++LPNG  W P L+
Sbjct:  673 DSGDMPLLRTISDVFGPSIWFNAIVGLTHAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMR-----LMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLL 775          
BLAST of CX671675 vs. ExPASy Swiss-Prot
Match: TC159_ARATH (Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.810e-11
Identity = 39/112 (34.82%), Postives = 58/112 (51.79%), Query Frame = -3
Query:  495 VDDLDRQ--------IIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG-----LNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAW 791
            VD LD Q        +++ +T + G  IW+ +++ LTHA   PPDG     L+YDV+ ++ S  + ++I    G  +        PV+LVEN   C KN    K+LPNG  W
Sbjct:  945 VDRLDTQTRDLNNLPLLRTITASLGTSIWKNAIVTLTHAASAPPDGPSGTPLSYDVFVAQCSHIVQQSIGQAVGDLRLMNPSLMNPVSLVENHPLCRKNREGVKVLPNGQTW 1056          
The following BLAST results are available for this feature:
BLAST of CX671675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TOC33_ARATH2.594e-5764.46Translocase of chloroplast 33, chloroplastic OS=Ar... [more]
TOC34_ARATH4.435e-4954.97Translocase of chloroplast 34, chloroplastic OS=Ar... [more]
TOC34_PEA2.875e-4856.89Translocase of chloroplast 34 OS=Pisum sativum GN=... [more]
TC120_ARATH1.490e-1236.11Translocase of chloroplast 120, chloroplastic OS=A... [more]
TC132_ARATH5.663e-1235.19Translocase of chloroplast 132, chloroplastic OS=A... [more]
TC159_ARATH2.810e-1134.82Translocase of chloroplast 159, chloroplastic OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E02-J4-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671675 ID=CX671675; Name=CX671675; organism=Citrus sinensis; type=EST; length=808bp
TTTTTTTTTGAGAGAACTCCAACTTAAAATAAAAAAGATTTCAATTATCT
TGACACAAACTAAGATGGTTCAAACAAATCTCTATTATCTGACATCCAAC
TTAATGACTTATAGCTTTCCTGTTTGTTCAGCGCGTAGCCGATAGGAACT
GTTACAGACTCTATAACTAATATCCGCATAATGCAGAACTAATAAATACA
ATAAACAAAATATTCAGAAGCAGCTCAATAAAGAACCATAAGATGACGAT
TACGACTGAAAATTGGCGAGATCAATACATGCAGTTCTCAGTAAGGCTTC
TTATCCTTTGCAATATCACTTTTTATTGCTCCTTCAATCCATTTCAGGAT
GAGCCACTGAAGCCCAATAACGGCAGGGATCCACATTTTCCCCTTATCAT
CAGAGCCAGATCCGTCAATCAGCTTCTTGTCAACTACAATAGATTTGCTC
TTATTTGTCGCAACATCTGTGATCCCTTTAACCAAGGTTGGAATCCACGC
ATTACCATTTGGAAGAATCTTCTCATCATTCTCATTTTTACTGCATCTGC
CGCTGTTCTCAACCAAAGCGACTGGAACAGCATAATCCTCAAATTCATGT
TTCCCGAGTCCAGCTCCTAGACGAATAGTCTTTAAAAGAGCATCGGATCG
TTTAGAGCAGTAAACATCATAGTTCAGTCCATCAGGAGGGCAGAGTTGTG
CATGAGTGAGAACAAGTAAACTTTTGCGCCATATTTGTTTGCCAAAAGTT
CCGGTGACAGCCTTAATAATTTGTCTATCCAAGTCATCTACTCCTATATG
CATCCAAA
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