CX671665

Overview
NameCX671665
Unique NameCX671665
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671665_ssr284 microsatellite CX671665_ssr284:284..298. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11965 contig Csv1_Contig11965:794..1617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671665 vs. ExPASy Swiss-Prot
Match: VPS41_SOLLC (Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum GN=VPS41 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 7.807e-73
Identity = 135/203 (66.50%), Postives = 159/203 (78.33%), Query Frame = -3 
Query:  232 EHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADIVNLLVKYYKEARRAVCLTNEEDDARAKRVGSRASQATEKVPTVRTMEVKSKTRGGARCCMCFDPFSIQNVSVIVFFCCHAYHMDCLKDSMQTVNGKKGAGATHREPISEYEYDNGV--EYENDDDDDE----AQSGAPRMRCILCTTAA 822
            EHTVGNLDPLYIVNM+PN LEIPRLRDRLVKI+TDYRTETSLRHGCNDILKAD VNLLVKYYKEA+R VCL++E DD  ++R     S   E+  +++++EVKSKTRGG RCC+CFDPFSI NVS+I FFCCHAYH  CL +S  +V GKK AG   +   S  EY NGV  +YE++D+++E    A SGA  MRCILCTTAA
Sbjct:  757 EHTVGNLDPLYIVNMLPNDLEIPRLRDRLVKIVTDYRTETSLRHGCNDILKADCVNLLVKYYKEAKRGVCLSDEVDDVSSRRGEKSVSHLGERTMSLKSVEVKSKTRGGGRCCICFDPFSILNVSIIAFFCCHAYHTTCLMESSISVGGKKEAGVAAQRTTSYDEYPNGVNDDYEDEDEEEEEEEDATSGALPMRCILCTTAA 959
[Close]
BLAST of CX671665 vs. ExPASy Swiss-Prot
Match: VPS41_ARATH (Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana GN=VPS41 PE=2 SV=3)

HSP 1 Score: 254.603 bits (649), Expect = 4.901e-67
Identity = 130/208 (62.50%), Postives = 151/208 (72.60%), Query Frame = -3 
Query:  229 EHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADIVNLLVKYYKEARRAVCLTNEEDDARAKRVGSRAS-----QATEKVPTVRTMEVKSKTRGGARCCMCFDPFSIQNVSVIVFFCCHAYHMDCLKDSMQTVNGKKGAGATHREPISEYEYDNGV-----EYENDDDDDEAQSGAPRMRCILCTTAAS 822
            EHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKI+TDYRTETSLRHGCNDILK DIVNLLVK + EARR VCL++E+DD+RAKR  +  S        +K  +++  EVKSKTRG  RCCMCFDP SI+  +V+VFFCCHAYH  CL D+  + N  K    T      EY YDNGV     + E D+D D  + G  R+RCILCTTAA+
Sbjct:  772 EHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKIVTDYRTETSLRHGCNDILKTDIVNLLVKCFNEARRGVCLSHEDDDSRAKREDNNRSSFSQRMVVDKSLSIKMTEVKSKTRGDTRCCMCFDPVSIRGDTVVVFFCCHAYHETCLMDAAFSNNNHK---TTKGSSGYEYSYDNGVDEEEEDEEEDEDGDGDRPGRSRLRCILCTTAAA 976
The following BLAST results are available for this feature:
BLAST of CX671665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VPS41_SOLLC7.807e-7366.50Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_ARATH4.901e-6762.50Vacuolar protein sorting-associated protein 41 hom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12D09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12D09-H18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671665 ID=CX671665; Name=CX671665; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTTTTTTTATCAATGCTCTTCATTATATTGATATGAATTAT
CATACAAGAATTGACCATAGATGCACAAAGAGGGGGGGAAAATTGATTTA
TCGCCGCACACAGGACATATACTCAGACGAAAAATAATAATAAATTAGAG
GGAAAACAAAAAGGGGGAACAACCGGACCCACCCAACCACCCAAATTAAT
GCAAGCACAGGCACACATCACTAACTCAACTAGCAGCAGTGGTACATAAG
ATACAACGCATACGAGGGGCACCTGATTGGGCTTCGTCGTCGTCGTCGTC
ATTTTCATATTCAACACCATTATCATATTCATATTCTGAAATTGGTTCTC
GGTGAGTGGCTCCAGCCCCTTTCTTACCATTAACAGTTTGCATGGAATCC
TTAAGACAATCCATGTGATAAGCATGACAGCAAAAGAACACAATTACTGA
TACATTTTGTATTGAGAAAGGATCAAAACACATGCAACATCTTGCACCAC
CCCTAGTTTTTGACTTAACCTCCATGGTTCTAACAGTCGGCACTTTTTCG
GTTGCCTGAGAAGCCCTACTGCCAACTCTTTTTGCTCGTGCATCATCTTC
TTCATTAGTCAAGCAAACTGCTCGCCTTGCTTCTTTGTAGTATTTAACCA
AGAGATTTACAATATCAGCCTTCAGAATGTCATTGCACCCATGTCTAAGA
GATGTTTCAGTCCTGTAATCAGTAATAATTTTCACCAGGCGATCTCTCAG
ACGAGGAATCTCTAAGCCATTGGGCACCATATTTACGATATATAGAGGAT
CGAGATTGCCAACAGTGTGCTCCA
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