CX671663

Overview
NameCX671663
Unique NameCX671663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671663 vs. ExPASy Swiss-Prot
Match: PEX19_PONAB (Peroxisomal biogenesis factor 19 OS=Pongo abelii GN=PEX19 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.533e-18
Identity = 49/138 (35.51%), Postives = 84/138 (60.87%), Query Frame = -3
Query:  210 EELAGSQDMESIVETMMQQLLSKDILHDPMKEIGERYPKWLEDHKASLNKEEYDRYFHQYELIKQLNEVYE---------NDPGNFTKIVDLMQKMQECGQPPNDIVQELAP--DFDLASLGLLSPEMHDSQEKCCIM 590
            +E  G  ++  I++++MQ LLSKD+L+  +KEI E+YP+WL+ H+ SL  E++++Y  Q+ ++ ++ E +E              F  ++DLMQ++Q+ G PP ++  E+ P  +FDL +L L  P    S E+C IM
Sbjct:  163 DEGDGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPP-GASGEQCLIM 299          
BLAST of CX671663 vs. ExPASy Swiss-Prot
Match: PEX19_HUMAN (Peroxisomal biogenesis factor 19 OS=Homo sapiens GN=PEX19 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.533e-18
Identity = 49/138 (35.51%), Postives = 84/138 (60.87%), Query Frame = -3
Query:  210 EELAGSQDMESIVETMMQQLLSKDILHDPMKEIGERYPKWLEDHKASLNKEEYDRYFHQYELIKQLNEVYE---------NDPGNFTKIVDLMQKMQECGQPPNDIVQELAP--DFDLASLGLLSPEMHDSQEKCCIM 590
            +E  G  ++  I++++MQ LLSKD+L+  +KEI E+YP+WL+ H+ SL  E++++Y  Q+ ++ ++ E +E              F  ++DLMQ++Q+ G PP ++  E+ P  +FDL +L L  P    S E+C IM
Sbjct:  163 DEGDGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPP-GASGEQCLIM 299          
BLAST of CX671663 vs. ExPASy Swiss-Prot
Match: PEX19_RAT (Peroxisomal biogenesis factor 19 OS=Rattus norvegicus GN=Pex19 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.644e-18
Identity = 47/138 (34.06%), Postives = 85/138 (61.59%), Query Frame = -3
Query:  210 EELAGSQDMESIVETMMQQLLSKDILHDPMKEIGERYPKWLEDHKASLNKEEYDRYFHQYELIKQLNEVYENDP---------GNFTKIVDLMQKMQECGQPPNDIVQELAP--DFDLASLGLLSPEMHDSQEKCCIM 590
            +E  G  ++  I++++MQ LLSKD+L+  +KEI E+YP+WL+ H+ S+  E++++Y  Q+ ++ ++ E +E +            F  ++DLMQ++Q+ G PP ++  E+ P  +FDL +L L  P   +  E+C IM
Sbjct:  163 DEGDGEGNILPIMQSLMQNLLSKDVLYPSLKEITEKYPEWLQSHQESIPPEQFEKYQQQHSVMGKICEQFEAETPTDSEATHRARFEAVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGANG-EQCLIM 299          
BLAST of CX671663 vs. ExPASy Swiss-Prot
Match: PEX19_CRIGR (Peroxisomal biogenesis factor 19 OS=Cricetulus griseus GN=PEX19 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.627e-18
Identity = 46/134 (34.33%), Postives = 83/134 (61.94%), Query Frame = -3
Query:  210 GSQDMESIVETMMQQLLSKDILHDPMKEIGERYPKWLEDHKASLNKEEYDRYFHQYELIKQLNEVYENDP---------GNFTKIVDLMQKMQECGQPPNDIVQELAP--DFDLASLGLLSPEMHDSQEKCCIM 578
            G  ++  I++++MQ LLSKD+L+  +KEI E+YP+WL+ H+ S+  E++++Y  Q+ ++ ++ E +E +            F  ++DLMQ++Q+ G PP ++  E+ P  +FDL +L L  P   +  E+C IM
Sbjct:  167 GDGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHQESIPPEQFEKYQEQHSVMGKICEQFEAETPTDSEATHRARFEAVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDTLNLSGPPGANG-EQCLIM 299          
BLAST of CX671663 vs. ExPASy Swiss-Prot
Match: PEX19_BOVIN (Peroxisomal biogenesis factor 19 OS=Bos taurus GN=PEX19 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.240e-17
Identity = 47/138 (34.06%), Postives = 82/138 (59.42%), Query Frame = -3
Query:  210 EELAGSQDMESIVETMMQQLLSKDILHDPMKEIGERYPKWLEDHKASLNKEEYDRYFHQYELIKQLNEVYE---------NDPGNFTKIVDLMQKMQECGQPPNDIVQELAP--DFDLASLGLLSPEMHDSQEKCCIM 590
            +E  G   +  I++++MQ LLS+D+L+  +KEI E+YP+WL  H+ SL  E++++Y  Q+ ++ ++ E +E              F  ++DLMQ++Q+ G PP ++  E+ P  +FDL +L L  P   +  E+C IM
Sbjct:  163 DEGDGEGTILPIMQSIMQNLLSRDVLYPSLKEITEKYPEWLRAHRDSLPPEQFEKYQEQHSVMGKICEQFEAETPTDSEATQKARFEVVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGANG-EQCLIM 299          
BLAST of CX671663 vs. ExPASy Swiss-Prot
Match: PEX19_MOUSE (Peroxisomal biogenesis factor 19 OS=Mus musculus GN=Pex19 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.150e-17
Identity = 47/138 (34.06%), Postives = 82/138 (59.42%), Query Frame = -3
Query:  210 EELAGSQDMESIVETMMQQLLSKDILHDPMKEIGERYPKWLEDHKASLNKEEYDRYFHQYELIKQLNEVYENDP---------GNFTKIVDLMQKMQECGQPPNDIVQELAP--DFDLASLGLLSPEMHDSQEKCCIM 590
            +E  G   +  I++++MQ LLSKD+L+  +KEI E+YP+WL+ H+ S   E++++Y  Q+ ++ ++ E +E +            F  ++DLMQ++Q  G PP ++  E+ P  +FDL +L L  P   +  E+C IM
Sbjct:  163 DEGDGEASILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHQDSTPPEQFEKYQQQHSVMVKICEQFEAETPTDSEATQRARFEAMLDLMQQLQALGHPPKELAGEMPPGLNFDLDALNLSGPPGANG-EQCLIM 299          
BLAST of CX671663 vs. ExPASy Swiss-Prot
Match: PEX19_CAEEL (Putative peroxisomal biogenesis factor 19 OS=Caenorhabditis elegans GN=prx-19 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.000e-11
Identity = 43/145 (29.66%), Postives = 74/145 (51.03%), Query Frame = -3
Query:  210 MESIVETMMQQLLSKDILHDPMKEIGERYPKWLEDHKASLNKEEYDRYFHQYELIKQLNEVYENDP-----------------------GNFTKIVDLMQKMQECGQPPNDIVQELAPDFDLASLGLLSPEMHD---SQEKCCIM 566
            ME  +  +MQ L SK++++ P+KEI + YPK+LED+ A L+ E  +RY  Q+E++ ++   +E  P                        +F K+  L+ ++Q+ G PP ++V  L   + +   GL  P++ D   + E C IM
Sbjct:  140 MEPFMSMIMQTLASKEVMYPPLKEIFDNYPKYLEDNGAGLDAETKERYEKQFEVLGKICTEFEKQPELAEVQPVDAATQPAPEADPASIEHFEKLGKLLVELQQYGYPPKELVGALPDGWQIDESGL--PKVADAAAATEACSIM 282          
The following BLAST results are available for this feature:
BLAST of CX671663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PEX19_PONAB2.533e-1835.51Peroxisomal biogenesis factor 19 OS=Pongo abelii G... [more]
PEX19_HUMAN2.533e-1835.51Peroxisomal biogenesis factor 19 OS=Homo sapiens G... [more]
PEX19_RAT5.644e-1834.06Peroxisomal biogenesis factor 19 OS=Rattus norvegi... [more]
PEX19_CRIGR9.627e-1834.33Peroxisomal biogenesis factor 19 OS=Cricetulus gri... [more]
PEX19_BOVIN6.240e-1734.06Peroxisomal biogenesis factor 19 OS=Bos taurus GN=... [more]
PEX19_MOUSE8.150e-1734.06Peroxisomal biogenesis factor 19 OS=Mus musculus G... [more]
PEX19_CAEEL3.000e-1129.66Putative peroxisomal biogenesis factor 19 OS=Caeno... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12D08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12D08-H16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671663 ID=CX671663; Name=CX671663; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTTTTTTAATAAAAGCTAATCTGGTTCATTAAAAGAATCA
CCAAACAAGCATACACTCAACTCTATCCCCAAACTTTATATCTCATTGAA
CTGATATTCAAATTAAATTAATTTATTTCTTGCAAATTCATATGAAAAGA
ATATCTAAGGCACAAATTGAAACAACAGCTGGGACTTGCAACTAGAACAT
GCCGCTTCACATTATACAACACTTCTCCTGAGAATCATGCATTTCTGGAG
ACAACAGGCCAAGACTAGCTAAATCAAAATCAGGAGCAAGCTCTTGCACA
ATATCATTTGGTGGTTGGCCACATTCTTGCATTTTCTGCATGAGATCAAC
AATCTTGGTGAAGTTACCAGGGTCATTTTCATATACTTCATTAAGCTGTT
TTATAAGTTCATATTGGTGGAAGTAACGGTCATATTCTTCTTTGTTCAAA
CTGGCTTTGTGGTCTTCCAACCATTTAGGGTATCTTTCTCCGATTTCCTT
CATTGGATCATGAAGAATATCCTTAGACAACAGCTGCTGCATCATGGTTT
CCACTATTGATTCCATGTCCTGAGAGCCGGCAAGCTCCTCAAACTGCTTA
ACCCAATCATCAACCATTGCATCCTCACCCGGCTTTGCCATCGACTCCAA
TCCCTTGACAGCCTCCCTAGTCTGTTCCCTCAATTTATCAAGTGCCTCAG
TGGCATGGGATTCCTTTGACACCTTTTGTTTTCCCTTTTTCTTGCTCTTC
AAGTCAGGCAATCCCATGCCCAACCCTTGCACTCCAGACGGTAAAGAAGC
AGATTCTTGCTTCTTCTCTGCGCCATTCCCTTCGCAACTCCTTT
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