EY664434

Overview
NameEY664434
Unique NameEY664434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664434 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.665e-19
Identity = 52/117 (44.44%), Postives = 70/117 (59.83%), Query Frame = 3
Query:  513 IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGELAADVTDXLLHETFASRYPFCKQQKVSLMPYWSIKSYGFVR 857
            + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+ S+FVG+L  DV D +L+E F   YP C+  KV L P    K YGFV+
Sbjct:   30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVK 143          
BLAST of EY664434 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.796e-18
Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  513 IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGELAADVTDXLLHETFASRYPFCKQQKVSLMPYWSIKSYGFVR 857
            + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+ S+FVG+L  DV D +L+E F   YP C+  KV L      K YGFV+
Sbjct:   30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVK 143          
BLAST of EY664434 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.796e-18
Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  513 IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGELAADVTDXLLHETFASRYPFCKQQKVSLMPYWSIKSYGFVR 857
            + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+ S+FVG+L  DV D +L+E F   YP C+  KV L      K YGFV+
Sbjct:   30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVK 143          
BLAST of EY664434 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.796e-18
Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  513 IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGELAADVTDXLLHETFASRYPFCKQQKVSLMPYWSIKSYGFVR 857
            + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+ S+FVG+L  DV D +L+E F   YP C+  KV L      K YGFV+
Sbjct:   30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVK 143          
BLAST of EY664434 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.395e-17
Identity = 50/117 (42.74%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  513 IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGELAADVTDXLLHETFASRYPFCKQQKVSLMPYWSIKSYGFVR 857
            + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+ T+    K+ DN P+ S+FVG+L  DV D +L+E F   YP C+  KV L      K YGFV+
Sbjct:   30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVK 143          
BLAST of EY664434 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.822e-17
Identity = 45/114 (39.47%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  522 IKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP--FRLNWATFSTGDKRSDNGPDLSIFVGELAADVTDXLLHETFASRYPFCKQQKVSLMPYWSIKSYGFVR 857
            +K+I ++ TG S GY FVE    A+ ++ +Q     L+P ++ P  F+LN+AT+    KR + GP+ S+FVG+L ++V D  LH+ F  ++P CK  KV   PY + + YGFV+
Sbjct:   36 VKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYGNSRGYGFVK 146          
BLAST of EY664434 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.645e-13
Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = 3
Query:  522 IKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFS-TGDKRSDNGPDLSIFVGELAADVTDXLLHETFASRYPFCKQQKVSLMPYWSI-KSYGFVR 857
            +K+IRN+ TG++ GY FVEF +   A   + S  +  +P T+  F+LNWA+     +K      + SIFVG+L+ +V +  ++  FASRY  CK  K+   P  ++ + YGFVR
Sbjct:  122 VKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVR 234          
BLAST of EY664434 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.494e-11
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 3
Query:  519 SIKVIRNKQTGLSE--GYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKRSDN----GPDLSIFVGELAADVTDXLLHETFASRYPFCKQQKVSLMPYWSI-KSYGFVR 857
            ++KV+R+K +       Y FV+F + A AE+ L  Y + ++P     F+LNWAT   G  + +N     P+ SIFVG+L     D  L  TF S YP C   K+ + P   + + YGFVR
Sbjct:  113 NVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWAT--GGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVR 230          
The following BLAST results are available for this feature:
BLAST of EY664434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TSAP1_MOUSE5.665e-1944.44tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSAP1_RAT4.796e-1843.59tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_HUMAN4.796e-1843.59tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN4.796e-1843.59tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_PONAB1.395e-1742.74tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSP1L_DANRE1.822e-1739.47tRNA selenocysteine 1-associated protein 1-like OS... [more]
YG41_SCHPO4.645e-1337.72Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO1.494e-1136.67RNA-binding post-transcriptional regulator csx1 OS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-066-E10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664434 ID=EY664434; Name=EY664434; organism=Citrus sinensis; type=EST; length=898bp
ATTATTTTGGTGGACGTGGTTTTTTTTTTTTCAAACTAAATAATATATTA
ATGTAGAAGAGGTAAATGAAATTCATAGTGCTTATGTTAATACTGATATT
CGTTTCTCTAGATATTTTTCTCCTTTGCAAGAAGAATAAAATGGTCCGAA
GGAAATAAGGTTATGGAAGTTTTTTCTGGAAAAAGAAGCTTTTATTTGTG
TACCACTCCTTACTACATATTTTATGTACTAAAAGCTTGTGGAAACTTTG
TTTTGTTTGGGACTGTCGAAAGATTATTGACTATTTTCTTAAATCATTCA
GCTAAGAGAACTCTTTAACCTGGTATTCATCCATATGGATGAGTTCCACT
CATATTGTTCTTCTCTTGTTACTTATTTTTCTTGCTCTGACAAAAAAAAT
GCTATATATCATTTAGATTACTTATTTTTCTTGCTCTGACAAAAAAATGC
TATATATCATTTAGATTACTTATTTTTCTTGCTCTGACAAAAAAATGCTA
TATATCATTTAGATTGCCTCCATTAAGGTTATTCGCAATAAGCAGACAGG
ATTGTCAGAAGGTTATGGATTTGTGGAATTTTTTACCCATGCAACAGCTG
AGAAAGTTCTGCAGAGCTATACTAGCATTCTGATGCCCAACACAGATCAG
CCTTTCCGCCTGAACTGGGCAACATTTAGTACGGGTGACAAGCGCTCAGA
TAATGGTCCTGATCTTTCTATTTTTGTAGGAGAATTAGCTGCCGATGTTA
CTGATAGNCTATTGCATGAAACTTTTGCTAGTAGATATCCTTTCTGTAAG
CAGCAAAAAGTGTCTTTGATGCCATACTGGTCGATCAAAAGTTATGGTTT
TGTAAGGTTGGAGATGATATGANAAGTCCCAGCCATGACTGAAATGAT
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