EY664428
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY664428 vs. ExPASy Swiss-Prot
Match: DDX42_MOUSE (ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3) HSP 1 Score: 101.293 bits (251), Expect = 8.304e-21 Identity = 51/90 (56.67%), Postives = 61/90 (67.78%), Query Frame = 1 Query: 28 KSTAFTLVTPKDHEFAGHLVRSLEGVGQEVPKPLMDLALQSSWFIKSRFKGGKGKSVNAGGAGLGYREPSG--------SNNFPAASSYQ 273 K A+TL+TPKD FAG LVR+LEG Q V K L+DLA+Q++WF KSRFKGGKGK +N GG GLGYRE G NN S+Y+ Sbjct: 595 KGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENSDRGNNNNVMSNYE 684
BLAST of EY664428 vs. ExPASy Swiss-Prot
Match: DDX42_PONAB (ATP-dependent RNA helicase DDX42 OS=Pongo abelii GN=DDX42 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20 Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 1 Query: 28 KSTAFTLVTPKDHEFAGHLVRSLEGVGQEVPKPLMDLALQSSWFIKSRFKGGKGKSVNAGGAGLGYREPSG 240 K A+TL+TPKD FAG LVR+LEG Q V K L+DLA+Q++WF KSRFKGGKGK +N GG GLGYRE G Sbjct: 595 KGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPG 665
BLAST of EY664428 vs. ExPASy Swiss-Prot
Match: DDX42_HUMAN (ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20 Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 1 Query: 28 KSTAFTLVTPKDHEFAGHLVRSLEGVGQEVPKPLMDLALQSSWFIKSRFKGGKGKSVNAGGAGLGYREPSG 240 K A+TL+TPKD FAG LVR+LEG Q V K L+DLA+Q++WF KSRFKGGKGK +N GG GLGYRE G Sbjct: 595 KGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPG 665
BLAST of EY664428 vs. ExPASy Swiss-Prot
Match: DDX42_CHICK (ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.416e-20 Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 1 Query: 28 KSTAFTLVTPKDHEFAGHLVRSLEGVGQEVPKPLMDLALQSSWFIKSRFKGGKGKSVNAGGAGLGYREPSG--------SNNFPAASSYQ 273 K A+TL+TPKD FAG LVR+LEG Q V K L+DLA+Q+ WF KSRFKGGKGK N GG GLGYRE G NN S+Y+ Sbjct: 595 KGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKPNIGGGGLGYRERPGLGSESSDRGNNNSVMSNYE 684
BLAST of EY664428 vs. ExPASy Swiss-Prot
Match: DDX42_XENLA (ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.045e-19 Identity = 57/134 (42.54%), Postives = 70/134 (52.24%), Query Frame = 1 Query: 28 KSTAFTLVTPKDHEFAGHLVRSLEGVGQEVPKPLMDLALQSSWFIKSRFKGGKGKSVNAGGAGLGYREPSGSNNFPAASSYQCXXXXXXXXXXXXXXXXXXXXXXXXEAFKMQYQNQFKASEDHTWEQTVGSSS 429 K A+TL+T K+ FAG LVR+LEG Q V K L+DLA+Q+SWF KSRFK GKGK +N GG GLGYRE G + AF+ QY+N F A+ T Q G+SS Sbjct: 592 KGVAYTLLTSKESNFAGDLVRNLEGANQYVSKELLDLAMQNSWFRKSRFKAGKGKKLNIGGGGLGYRERPGLGAESSEHGTGGNVMSNYEAFKPSGGAMGDRLSAMKSAFQSQYKNHFVAASAST--QKTGTSS 723 The following BLAST results are available for this feature:
BLAST of EY664428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY664428 ID=EY664428; Name=EY664428; organism=Citrus sinensis; type=EST; length=928bpback to top |