EY664428

Overview
NameEY664428
Unique NameEY664428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664428 vs. ExPASy Swiss-Prot
Match: DDX42_MOUSE (ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 8.304e-21
Identity = 51/90 (56.67%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   28 KSTAFTLVTPKDHEFAGHLVRSLEGVGQEVPKPLMDLALQSSWFIKSRFKGGKGKSVNAGGAGLGYREPSG--------SNNFPAASSYQ 273
            K  A+TL+TPKD  FAG LVR+LEG  Q V K L+DLA+Q++WF KSRFKGGKGK +N GG GLGYRE  G         NN    S+Y+
Sbjct:  595 KGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENSDRGNNNNVMSNYE 684          
BLAST of EY664428 vs. ExPASy Swiss-Prot
Match: DDX42_PONAB (ATP-dependent RNA helicase DDX42 OS=Pongo abelii GN=DDX42 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   28 KSTAFTLVTPKDHEFAGHLVRSLEGVGQEVPKPLMDLALQSSWFIKSRFKGGKGKSVNAGGAGLGYREPSG 240
            K  A+TL+TPKD  FAG LVR+LEG  Q V K L+DLA+Q++WF KSRFKGGKGK +N GG GLGYRE  G
Sbjct:  595 KGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPG 665          
BLAST of EY664428 vs. ExPASy Swiss-Prot
Match: DDX42_HUMAN (ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   28 KSTAFTLVTPKDHEFAGHLVRSLEGVGQEVPKPLMDLALQSSWFIKSRFKGGKGKSVNAGGAGLGYREPSG 240
            K  A+TL+TPKD  FAG LVR+LEG  Q V K L+DLA+Q++WF KSRFKGGKGK +N GG GLGYRE  G
Sbjct:  595 KGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPG 665          
BLAST of EY664428 vs. ExPASy Swiss-Prot
Match: DDX42_CHICK (ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.416e-20
Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   28 KSTAFTLVTPKDHEFAGHLVRSLEGVGQEVPKPLMDLALQSSWFIKSRFKGGKGKSVNAGGAGLGYREPSG--------SNNFPAASSYQ 273
            K  A+TL+TPKD  FAG LVR+LEG  Q V K L+DLA+Q+ WF KSRFKGGKGK  N GG GLGYRE  G         NN    S+Y+
Sbjct:  595 KGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKPNIGGGGLGYRERPGLGSESSDRGNNNSVMSNYE 684          
BLAST of EY664428 vs. ExPASy Swiss-Prot
Match: DDX42_XENLA (ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.045e-19
Identity = 57/134 (42.54%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   28 KSTAFTLVTPKDHEFAGHLVRSLEGVGQEVPKPLMDLALQSSWFIKSRFKGGKGKSVNAGGAGLGYREPSGSNNFPAASSYQCXXXXXXXXXXXXXXXXXXXXXXXXEAFKMQYQNQFKASEDHTWEQTVGSSS 429
            K  A+TL+T K+  FAG LVR+LEG  Q V K L+DLA+Q+SWF KSRFK GKGK +N GG GLGYRE  G     +                               AF+ QY+N F A+   T  Q  G+SS
Sbjct:  592 KGVAYTLLTSKESNFAGDLVRNLEGANQYVSKELLDLAMQNSWFRKSRFKAGKGKKLNIGGGGLGYRERPGLGAESSEHGTGGNVMSNYEAFKPSGGAMGDRLSAMKSAFQSQYKNHFVAASAST--QKTGTSS 723          
The following BLAST results are available for this feature:
BLAST of EY664428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DDX42_MOUSE8.304e-2156.67ATP-dependent RNA helicase DDX42 OS=Mus musculus G... [more]
DDX42_PONAB1.085e-2066.20ATP-dependent RNA helicase DDX42 OS=Pongo abelii G... [more]
DDX42_HUMAN1.085e-2066.20ATP-dependent RNA helicase DDX42 OS=Homo sapiens G... [more]
DDX42_CHICK2.416e-2056.67ATP-dependent RNA helicase DDX42 OS=Gallus gallus ... [more]
DDX42_XENLA2.045e-1942.54ATP-dependent RNA helicase DDX42 OS=Xenopus laevis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-066-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664428 ID=EY664428; Name=EY664428; organism=Citrus sinensis; type=EST; length=928bp
CCACGCGTCCGCTGGTCGAGCTGGAGAAAAAGTACAGCATTTACTCTAGT
CACACCAAAAGATCATGAATTTGCTGGTCATTTGGTACGAAGTCTTGAAG
GTGTGGGACAGGAAGTTCCCAAACCACTTATGGATCTTGCCCTGCAGAGC
TCATGGTTCATAAAAAGTCGTTTCAAAGGAGGAAAGGGCAAATCAGTGAA
TGCTGGAGGTGCTGGACTAGGATATCGGGAACCATCGGGCTCCAATAATT
TTCCCGCAGCGAGTTCGTATCAGTGTCCAAAACCTGCAACTGCAGTACCG
CCACCACCTAAAGGTGGTCCTGGGGCAGGACGACTATTGGCCCTGAAAGA
AGCGTTTAAAATGCAATATCAAAACCAATTTAAAGCCAGTGAAGATCACA
CTTGGGAACAAACAGTAGGATCAAGTTCAACGGTAAAAGTACATACAGGT
CCATTAAAAGAACGAAAAGCCAAAAAAAACCGGTGGGACAATTGAAAAGT
TTATTTATAAGCCAAAAATTCTTAATTTTGTTTGATCTAAAATCTATTTA
AATGCTAAGACTTTATAATAACTTAAGTAATTGTCTTATAAATAAAAATT
TGTTACAAGTTTTTAAAACAAAGTTTAGTTTTATTTTTCCAATAAAAAAT
TGTTAGTGATATANTTTTGTAGTACACTAACTTTTAAAATCGNCGTGTTA
GATCATGTTAATAAACAGTTTTTGTGAATCCCTATTATCCTAAAATCTAA
GCTTAGTATGAAAAAAATACTGACGCTAATTATAAACTAAGTATACACCC
AATAATAGCATTCTCAACTGGGGATAAATGTAATTATTTTTTATTCTTTT
AGAAGGGATAGTTATAATAATTCAATTCCATCTGATGTAATTCATTAGGN
ACATTATCAATTTTGCCAGGCATTAAAA
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