CX671524

Overview
NameCX671524
Unique NameCX671524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5061 contig Csv1_Contig5061:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671524 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 44/91 (48.35%), Postives = 52/91 (57.14%), Query Frame = -3 
Query:  434 GPADIQKLMQAMSM------APTHQGGNFVPFPTSSFPIMGQVNPANGVTSTGTNKQPFES---PVSSTTPSQSAKDYDFFSLTAGMFTKH 679
            G AD+QKLMQ M+M       P     N + +P+SSF  MGQ N  NG+T   T K    S   P S+T  SQS KD+DF SL  GMFTKH
Sbjct:  393 GQADLQKLMQNMNMNANMNTRPAQPQENTLQYPSSSFYTMGQANQVNGMTPNSTGKPQSSSATQPTSTTPSSQSGKDFDFSSLMDGMFTKH 483
The following BLAST results are available for this feature:
BLAST of CX671524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AGD5_ARATH2.414e-1348.35Probable ADP-ribosylation factor GTPase-activating... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11F01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F01-L1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671524 ID=CX671524; Name=CX671524; organism=Citrus sinensis; type=EST; length=708bp
TTTTTTTTTTTTTTTTTGTTGCCAAATAGTTTGCTTAAATTACAATGGCT
GTAACTAAATTAAACTTCCAAGGAACCACACGTACATCTCGCTTGATTTT
ACGAACTGGGAAAAAGGATTACAAAAGGAAATATTGAACAGTAAAAAAAA
AGGGGCATCACATAGTGGAAAATCAATCCAATCAATCTAACCCCATCTTT
ATTACTCTCCAATACATCTACCCTTACATTTAAATGCAGCCCCCACCCAA
ATATGAAAAAAACAAAAAACCAAAAGGGGCCTCTACAATAGTTTACAACT
CCCAGTACAGGAAAGGAAACAAAAAAAAAAGGGGAGGGGAAAAAAAAATT
AATCCCAGTGGGCTATTTCCTGGGATTCAACTATATTGGTATGGTTTGAA
AAAGGCAGCACTTTTTAACCCTAAGGCCACTCAATGCTTTGTGAACATCC
CTGCCGTTAGTGAAAAAAAATCATAATCCTTTGCTGATTGGGAAGGAGTT
GTTGATGAAACAGGGGATTCAAATGGTTGTTTATTTGTTCCAGTGCTCGT
CACACCATTTGCTGGATTAACTTGCCCCATAATAGGAAAGCTGGATGTAG
GAAATGGAACAAAATTCCCCCCTTGATGTGTTGGTGCCATGCTCATAGCC
TGCATAAGTTTCTGTATATCAGCCGGTCCAGCAGCCACTTGATGTGTTGG
TACCATGC
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