EY664402

Overview
NameEY664402
Unique NameEY664402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664402 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 405.601 bits (1041), Expect = 2.643e-113
Identity = 196/222 (88.29%), Postives = 211/222 (95.05%), Query Frame = 2
Query:   83 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTIAVVGAGEPFIF 748
            MFRNQYDTDVTTWSP GRLFQVEYAMEAVKQGSAAIGLRS++HVVL CVNKA SELSSHQ+KIFKVDDHIGVAIAGLTADGRVLSRYMRSE IN+S+TYESPLPVGRLVV LADKAQVCTQRSWKRPYGVGLLV GLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE+F +S+REDLIKDA++A+RETLQGETLKSS+CT+A++G  EPF F
Sbjct:    1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQGETLKSSLCTVAILGVDEPFHF 222          

HSP 2 Score: 25.7942 bits (55), Expect = 2.643e-113
Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  742 YILDQETVQKLIDSFD 789
            + LDQE +QK+ID+F+
Sbjct:  221 HFLDQEAIQKVIDTFE 236          
BLAST of EY664402 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 405.216 bits (1040), Expect = 2.643e-113
Identity = 197/222 (88.74%), Postives = 211/222 (95.05%), Query Frame = 2
Query:   83 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTIAVVGAGEPFIF 748
            MFRNQYDTDVTTWSP GRLFQVEYAMEAVKQGSAAIGLRS++HVVL CVNKA SELSSHQ+KIFKVDDHIGVAIAGLTADGRVLSRYMRSE IN+S+TYESPLPVGRLVV LADKAQVCTQRSWKRPYGVGLLV GLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER+FE+F ES++EDLIKDA+MAIRETLQGETLKSS+CT++V+G  EPF F
Sbjct:    1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQGETLKSSLCTVSVLGVDEPFHF 222          

HSP 2 Score: 26.1794 bits (56), Expect = 2.643e-113
Identity = 9/16 (56.25%), Postives = 15/16 (93.75%), Query Frame = 1
Query:  742 YILDQETVQKLIDSFD 789
            + LDQE++QK+ID+F+
Sbjct:  221 HFLDQESIQKVIDTFE 236          
BLAST of EY664402 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 2.569e-99
Identity = 173/215 (80.47%), Postives = 195/215 (90.70%), Query Frame = 2
Query:   83 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTIAVVG 727
            MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSA +GLRS+TH VL   NKA SELSSHQ+K+F+V DH GVA+AGLTADGRVLSR++RSECIN+++ Y++PLPV RL ++LADKAQVCTQRSWKRPYGVGLLVAGLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKT+LERRFE +++ T E LIKDAL AI+ETLQGE L SS CT+A+VG
Sbjct:    1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVG 215          
BLAST of EY664402 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.854e-73
Identity = 133/222 (59.91%), Postives = 174/222 (78.38%), Query Frame = 2
Query:   83 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG--ETLKSSICTIAVVGAGEPF 742
            M+RNQYD+D+TT+SP+GR+ Q+EYAMEAVKQG AA+ L+SK   VL  + +++SEL S+QKKIF VDDH+G+AI+GLTAD R+L  YMR+EC NY+Y YES + V RLV ++ADK QV TQR  +RPYGVGLLVAG D+ GAH+Y  CPSGN+++Y++ +IGSRSQ+AKTYLE+ FE+F E T E LI   L A+RET+    +TL S   +I +VG G+PF
Sbjct:    1 MYRNQYDSDITTFSPSGRIHQIEYAMEAVKQGGAAVALKSKQFAVLVSLKRSSSELGSYQKKIFVVDDHVGIAISGLTADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQRYGRRPYGVGLLVAGYDQLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDTLNSKNVSIGIVGEGQPF 222          
BLAST of EY664402 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.423e-67
Identity = 121/216 (56.02%), Postives = 159/216 (73.61%), Query Frame = 2
Query:   83 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTIAVVG 727
            MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VD+HIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E   ++L+K  L A+RETL  E  L +   +I +VG
Sbjct:    1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVG 216          
BLAST of EY664402 vs. ExPASy Swiss-Prot
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 7.545e-67
Identity = 121/216 (56.02%), Postives = 158/216 (73.15%), Query Frame = 2
Query:   83 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTIAVVG 727
            MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VD+HIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   +I +VG
Sbjct:    1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVG 216          
BLAST of EY664402 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 7.545e-67
Identity = 121/216 (56.02%), Postives = 158/216 (73.15%), Query Frame = 2
Query:   83 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTIAVVG 727
            MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VD+HIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   +I +VG
Sbjct:    1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVG 216          
BLAST of EY664402 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 7.545e-67
Identity = 121/216 (56.02%), Postives = 158/216 (73.15%), Query Frame = 2
Query:   83 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTIAVVG 727
            MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VD+HIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   +I +VG
Sbjct:    1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVG 216          
BLAST of EY664402 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.287e-66
Identity = 120/216 (55.56%), Postives = 159/216 (73.61%), Query Frame = 2
Query:   83 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTIAVVG 727
            MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VD+HIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F +   ++L+K  L A+RETL  E  L +   +I +VG
Sbjct:    1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVG 216          
BLAST of EY664402 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.195e-66
Identity = 120/216 (55.56%), Postives = 158/216 (73.15%), Query Frame = 2
Query:   83 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTIAVVG 727
            MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++H+KKI  VD+HIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   +I +VG
Sbjct:    1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHRKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVG 216          
The following BLAST results are available for this feature:
BLAST of EY664402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSA1A_ARATH2.643e-11388.29Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]
PSA1B_ARATH2.643e-11388.74Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA1_ORYSJ2.569e-9980.47Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA1_DICDI1.854e-7359.91Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA1_MOUSE4.423e-6756.02Proteasome subunit alpha type-1 OS=Mus musculus GN... [more]
PSA1_PONAB7.545e-6756.02Proteasome subunit alpha type-1 OS=Pongo abelii GN... [more]
PSA1_HUMAN7.545e-6756.02Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]
PSA1_BOVIN7.545e-6756.02Proteasome subunit alpha type-1 OS=Bos taurus GN=P... [more]
PSA1_RAT1.287e-6655.56Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSA1_MACFA2.195e-6655.56Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-066-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664402 ID=EY664402; Name=EY664402; organism=Citrus sinensis; type=EST; length=919bp
ACGGCCCGACCCACGCGTCCGGNTTTACTTTCAGCGTTTGTTTCATCGCG
AAATCCTACGGCACGAAAGATTAAACCCTAAAATGTTTAGGAACCAATAC
GACACCGACGTGACAACATGGAGCCCCGCGGGCCGATTATTTCAAGTGGA
GTACGCGATGGAGGCCGTCAAGCAAGGCTCCGCCGCAATTGGGCTCCGAT
CTAAGACTCACGTGGTCTTGGGCTGCGTTAACAAGGCCAACTCCGAGCTC
TCGTCTCACCAGAAGAAGATCTTCAAGGTCGACGACCACATCGGCGTCGC
TATCGCCGGTCTCACCGCCGACGGCCGTGTTCTGTCTCGGTACATGCGAT
CCGAGTGTATTAACTACAGTTACACTTACGAGTCGCCGCTTCCTGTCGGC
CGCCTTGTTGTCCAGCTCGCTGACAAGGCTCAGGTCTGTACCCAGCGCTC
ATGGAAACGGCCATATGGTGTTGGCCTGCTGGTTGCTGGCTTGGATGAAA
AAGGAGCCCACCTTTATTATAACTGCCCAAGTGGGAACTATTTTGAGTAT
CAAGCATTTGCCATTGGGTCCCGATCTCAAGCTGCAAAGACATACTTGGA
ACGCAGGTTTGAGAACTTTTCAGAATCTACAAGAGAAGATCTGATCAAGG
ACGCTCTCATGGCAATAAGGGAAACCTTACAAGGAGAAACACTAAAGAGT
TCTATTTGCACAATTGCTGTGGTAGGAGCTGGGGAGCCATTTATATTTTA
GATCAAGAAACTGTACAAAAGTTAATTGATTCATTTGACATTGCTTGCAC
TGAANAGGGTCCTGCTGCTGCACCANATAGTGCTGCAAAANGAGGCAGTG
CTGCATAAGGAGGCGCAACTTCTATACAGTTGCTTCANCAGACCAGGGGG
AACTCCCATGAAATTTGAG
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