CX671482

Overview
NameCX671482
Unique NameCX671482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671482 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.252e-73
Identity = 150/234 (64.10%), Postives = 172/234 (73.50%), Query Frame = -3
Query:  150 LLGFKSSFSSHHRNLSLSTTHQDVSRRS----SKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXAISNFTN 836
            LLGF  SF    +NL +S+   D S RS    SKN   T+AFF+N    + ++SRP+  K+QEL VYE+NE DRNSPA+LKL +KP  L +GDLVPFTNKLYTGDL+KR+GITAGLCVLI+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYEDT+LAVTGGSGIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP EL    V PS  V              ISNFTN
Sbjct:   32 LLGFSRSF----QNLGISSNGPDFSSRSRSTTSKNLNVTRAFFWNW-GKKTENSRPS--KIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKDVKPAPEAKAMEPSGVISNFTN 258          
BLAST of CX671482 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 3.084e-72
Identity = 147/230 (63.91%), Postives = 164/230 (71.30%), Query Frame = -3
Query:  150 LGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNK-PSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGV-ADLPQELLVKPVEPSPTVXXXXXXXXXXXXXAISNFTN 833
            LGF  SF     N  +S+    +S R+     +T  FF     SS  D SRP   K+QEL VYE NE DRNSPA+LKL +KP+ L +GDLVPFTNKLYTGDL KRIGITAGLCVLI+H PEKKGDRFEA YSFYFGDYGHISVQG YLTYEDT+LA+TGGSG+FEG YGQVKL Q+V+P KLFYTFYLKGV ADLP EL  K VEPS  V              I+NFTN
Sbjct:   31 LGFSRSF----HNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPT--KIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFTN 254          
BLAST of CX671482 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.534e-63
Identity = 135/233 (57.94%), Postives = 159/233 (68.24%), Query Frame = -3
Query:  150 LLGFKSSFSSHHRNLSLSTTHQDVSRRSS---KNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXAISNFTN 836
            LLG   SF    +NL +S+   D S  SS   K N+T         S   +   P  +KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP EL   PV PS  +              ISN+TN
Sbjct:   30 LLGSSKSF----QNLGISSNGSDFSYPSSFTAKKNLTASRAL----SQNGNIENPRPSKVQELSVYEINELDRHSPKILK-NAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 253          
BLAST of CX671482 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.464e-63
Identity = 130/230 (56.52%), Postives = 157/230 (68.26%), Query Frame = -3
Query:  150 LLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXAISNFTN 836
            LLGF  SF +   + +   +    S    K    T+A   N  +++     P  +KVQEL VYEIN+ DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP EL+  PV PS  V              +SNFTN
Sbjct:   30 LLGFSKSFQNFGISSNGPGSSSPTSFTPKKKLTPTRALSQNLGNTE----NPRPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKPSGVVSNFTN 254          
The following BLAST results are available for this feature:
BLAST of CX671482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC3_ARATH1.252e-7364.10Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC4_ARATH3.084e-7263.91Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH1.534e-6357.94Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH4.464e-6356.52Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11D02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11D02-H3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671482 ID=CX671482; Name=CX671482; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTAGTGGAATTATTTTTATTTTTATTTTATATTAATAAAAAAAAAG
AGTAATTAATTAACACGGCCGCCGAGGGAACACACACCGACTACTTGATC
AAACTAAAATGAAAAAGAAATGCCTGCCGCATCATGGATCAGTTAATTAA
TTGGTAAAGTTACTGATGGCGGCGTGAGGCTCGGTGGCCTTGGCAGCCGG
AGCAGCCTCGACGGTCGGCGACGGCTCCACGGGTTTCACCAGAAGCTCTT
GCGGCAAGTCAGCGACACCCTTCAAGTAAAAAGTGTAAAACAACTTGTAA
GGGAAAACAATTTGATGCAACTTGACTTGTCCGTACACGCCCTCAAAGAT
CCCGGAGCCACCGGTGACGGCCAAGTACGTGTCTTCGTAAGTCAAATAAG
CTCCCTGCACGGATATGTGACCGTAGTCACCGAAGTAGAAGCTGTAAATC
GCTTCAAACCGGTCACCCTTCTTCTCCGGTTCGTGCTTGATCAACACGCA
GAGCCCCGCCGTGATGCCAATGCGCTTCTGTAAGTCGCCGGTGTAGAGCT
TGTTCGTGAAGGGCACAAGGTCGCCGATTGTGAGATGTTCAGGCTTTTGG
CTTAGCTTCAGAATTGCCGGGCTGTTTCTGTCCCGCTCGTTGATCTCATA
CACGAACAGTTCTTGAACCTTATTATTAGCAGGCCTGGAAGAATCTGGTT
GGCTGCTGGGTTTGTTGAAGAAGAAAGCTTTGGTGGTGACGTTGTTCTTG
GAGCTTCTTCTTGAGACATCTTGGTGGGTTGTTGAGAGACTGAGGTTTCG
ATGATGAGAGGAAAAAGATGATTTGAAACCTAGCAACCTTTGGGTTTCGG
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