EY664386

Overview
NameEY664386
Unique NameEY664386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7754 contig Csv1_Contig7754:22..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664386 vs. ExPASy Swiss-Prot
Match: TTC7A_MOUSE (Tetratricopeptide repeat protein 7A OS=Mus musculus GN=Ttc7a PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.993e-13
Identity = 51/146 (34.93%), Postives = 73/146 (50.00%), Query Frame = 1
Query:   37 QVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPIESFSSIA 474
            Q+W   A L+      K+   C+ +A  L   S  +L+  G + E  G   EA + Y  AL + P  V     +G + S+LG K+L  A+ +L DA+  + T  +AW  LG V +D G+   A DCF  A  LE S P+  FS IA
Sbjct:  712 QIWLQAAELFMEQRQLKEAGFCIQEAAGLFPTSHSVLYMRGRLAEVKGSFEEAKQLYKEALTVNPDGVRIMHSLGLMLSQLGHKSL--AQKVLRDAVERQSTFHEAWQGLGEVLQDQGQNEAAVDCFLTALELEASSPVLPFSIIA 855          
BLAST of EY664386 vs. ExPASy Swiss-Prot
Match: TTC7A_HUMAN (Tetratricopeptide repeat protein 7A OS=Homo sapiens GN=TTC7A PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13
Identity = 50/145 (34.48%), Postives = 72/145 (49.66%), Query Frame = 1
Query:   37 QVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPIESFSSI 471
            Q+W   A L+    H K+   C+ +A  L   S  +L+  G + E  G   EA + Y  AL + P  V     +G + S+LG K+L  A+ +L DA+  + T  +AW  LG V +  G+   A DCF  A  LE S P+  FS I
Sbjct:  712 QIWLQAAELFMEQQHLKEAGFCIQEAAGLFPTSHSVLYMRGRLAEVKGNLEEAKQLYKEALTVNPDGVRIMHSLGLMLSRLGHKSL--AQKVLRDAVERQSTCHEAWQGLGEVLQAQGQNEAAVDCFLTALELEASSPVLPFSII 854          
BLAST of EY664386 vs. ExPASy Swiss-Prot
Match: TTC7B_HUMAN (Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.156e-11
Identity = 46/146 (31.51%), Postives = 69/146 (47.26%), Query Frame = 1
Query:   34 SQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPIESFSSI 471
            +Q+W   A +Y G+    +   C  +A  L   S  +L+  G + E  G   EA R Y  AL I P++V     +  +  +LG  +L  A  +L DA+++  T  + W  LG V +  G  A A +CF  A  LE S P   F+ I
Sbjct:  696 AQIWLHAAEVYIGIGKPAEATACTQEAANLFPMSHNVLYMRGQIAELRGSMDEARRWYEEALAISPTHVKSMQRLALILHQLGRYSL--AEKILRDAVQVNSTAHEVWNGLGEVLQAQGNDAAATECFLTALELEASSPAVPFTII 839          
The following BLAST results are available for this feature:
BLAST of EY664386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TTC7A_MOUSE1.993e-1334.93Tetratricopeptide repeat protein 7A OS=Mus musculu... [more]
TTC7A_HUMAN2.603e-1334.48Tetratricopeptide repeat protein 7A OS=Homo sapien... [more]
TTC7B_HUMAN4.156e-1131.51Tetratricopeptide repeat protein 7B OS=Homo sapien... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-066-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664386 ID=EY664386; Name=EY664386; organism=Citrus sinensis; type=EST; length=872bp
CTTTCATTTATCGAGGATGATAAAGTCAATGAATCTCAAGTTTGGCATGG
TCTCGCAAATTTATATTCAGGCCTTTCACATTGGAAGGATGTTGCAATAT
GTATGGGAAAAGCCAGAGAGTTGAAAGCCTACTCTGCTGAAATGCTGCAC
ACAGAAGGTGTTATGCATGAAGGATGTGGGCAAACACATGAAGCTCTGCG
TGCTTATATCAATGCTCTTTTAATCGAACCATCTTATGTGCCCTGCAAAG
TACTGGTCGGCTCTTTGTTCTCAAAGTTGGGCCCAAAGGCATTGCCTGTT
GCAAGAAGCTTACTGTCAGATGCATTAAGGATAGAACCTACCAATCGTAA
GGCTTGGTATTACTTGGGGTTGGTTCATAAAGACGATGGACGAATAGCTG
ATGCCGCAGACTGCTTCCAGGCAGCCTCCATGCTTGAAGAATCTGATCCA
ATTGAAAGCTTCAGTTCTATTGCTTGACTGGCTCCAATATATCAAAGTCA
AATCTTCACCTTTGTGTAACATGTCTTCAATGCACGACTTGAGAAGTCCA
GTGCTCAAGGATTGTTTCGTGGATTTGTTCCATTGGTGATTATGGGTATT
TTCCCAGTTCATTATTTAAGACACCTCGCCGTAATCAAGGTCTCGGCGAA
AATGAGGGACTCAGTCACTGAAGTTGATGTAGGGAAACAAGAACAGAGAA
AGAAGAGGTAAATTTTAGTTGCTCAATCCAATTGTAGGATGAATAGTAGT
ACTAGAGATTTGTAAGCATGTATGGGGTAAATCTGCATCATTGCCGGCTG
TGTAAATTTTTTTTGTTTAAGAAAGCATTGTTGCTAAATATAGTACATAT
TCTTTTCCAAAAAAAAATAAAG
back to top