CX671477

Overview
NameCX671477
Unique NameCX671477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.261e-38
Identity = 77/83 (92.77%), Postives = 80/83 (96.39%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 251
            DKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct:  198 DKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct:  158 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 225          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct:  186 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP ANN
Sbjct:  185 DPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANN 252          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP ANN
Sbjct:  184 DKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP ANN
Sbjct:  184 DKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL+DP ANN
Sbjct:  186 DPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  199 DPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP ANN
Sbjct:  186 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANN 253          
BLAST of CX671477 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 206
            DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP ANN
Sbjct:  186 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253          
The following BLAST results are available for this feature:
BLAST of CX671477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB26_ARATH1.261e-3892.77Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB25_SOLLC5.143e-2473.53Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC5.143e-2473.53Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_LEMGI6.717e-2475.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_ORYSJ1.146e-2373.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.146e-2373.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI1.146e-2375.00Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2A_PINSY1.496e-2375.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB26_PETSP1.496e-2373.53Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC1.496e-2373.53Chlorophyll a-b binding protein 36, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C10-F19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671477 ID=CX671477; Name=CX671477; organism=Citrus sinensis; type=EST; length=706bp
AGGACAAGCTTCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAG
GATCCTGACCAATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAG
ACTTGCAATGTTTGCCATGCTTGGTTTCTTTCTCCAAGCTTATGTCACAG
GTGAAGGTCCAGTTGAGAACCTTGCTAAACATCTCAGTGATCCTTTTGCC
AACAACTTGCTTACCGTGATCTCCGGAAACGCAGAGAGAGCTCCCACCCT
GTGATTTCAGTTGTTCTGGTGTTCTTTTCACTCGAATCTAAAATGCATTG
TACATCTCATCATCAAGACATTTCCAAGATGTTGAAACCTTAAATGATCA
TGGCACTCGAATCCCTACTCTCTGAGTTATAGAGCTTGAGTGTTATTCAC
CTATAACCTCTTCTGATATATCATTTAAGCTAAATTGAATCTTGTTCTTA
TGATGCAAGACACGTAAAGGGGGTTAACCAAAGTTGGTTGGTGTGAGTGA
TTCGGCACTCTCACTCCTTAAGAGAGGTCAGGAGTTTAAGTCCCGCTCTC
GTATGGAATCACCACTTTAGTCAGTATTTTATCCTTTACGGGCCGACCTG
GTGCGAGCGAGGATTAGTCTGGGTTGTGGTACGGACTTAAAAGTGCCTCT
CACAATTGGAGCTCACTCAGGACTACCTCGTGGTTCAGATAAAAAAAAAA
AAAAAA
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