CX671476

Overview
NameCX671476
Unique NameCX671476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.373e-39
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = -3
Query:  457 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 708
            EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct:  197 EDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = -3
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct:  158 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 225          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = -3
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct:  186 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.828e-24
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = -3
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP ANN
Sbjct:  185 DPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANN 252          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = -3
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP ANN
Sbjct:  184 DKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = -3
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP ANN
Sbjct:  184 DKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  502 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 708
            ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  187 EDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  502 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 708
            ED L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  186 EDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = -3
Query:  502 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 705
            D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL+DP ANN
Sbjct:  186 DPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253          
BLAST of CX671476 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  502 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 708
            ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  187 EDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of CX671476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB26_ARATH3.373e-3992.86Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB25_SOLLC5.228e-2473.53Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC5.228e-2473.53Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_LEMGI6.828e-2475.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_ORYSJ1.165e-2373.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.165e-2373.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ARATH1.165e-2373.91Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SINAL1.165e-2375.36Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_GOSHI1.165e-2375.00Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_ARATH1.165e-2373.91Chlorophyll a-b binding protein 165/180, chloropla... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_11C10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C10-F19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671476 ID=CX671476; Name=CX671476; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTTTTTTTTTTTATCTGAACCACGAGGTAGTCCTGAGTGAGCTCC
AATTGTGAGAGGCACTTTTAAGTCCGTACCACAACCCAGACTAATCCTCG
CTCGCACCAGGTCGGCCCGTAAAGGATAAAATACTGACTAAAGTGGTGAT
TCCATACGAGAGCGGGACTTAAACTCCTGACCTCTCTTAAGGAGTGAGAG
TGCCGAATCACTCACACCAACCAACTTTGGTTAACCCCCTTTACGTGTCT
TGCATCATAAGAACAAGATTCAATTTAGCTTAAATGATATATCAAAAGAG
GTTATAGGTGAATAACACTCAAGCTCTATAACTCAAAGAGTAGGGATTCG
AGTGCCATGATCATTTAAGGTTTCAACATCTTGGAAATGTCTTGATGATG
AGATGTACAATGCATTTTAGATTCGAGTGAAAAGAACACCAGAACAACTG
AAATCACAGGGTGGGAGCTCTCTCTGCGTTTCCGGAGATCACGGTAAGCA
AGTTGTTGGCAAAAGGATCACTGAGATGTTTAGCAAGGTTCTCAACTGGA
CCTTCACCTGTGACATAAGCTTGGAGAAAGAAACCAAGCATGGCAAACAT
TGCAAGTCTTCCATTCTTGATCTCCTTCACTTTTAGCAATGCAAATTGGT
CAGGATCCTTTGCTAATCCCAGTGGGTCAAATGGACCACCTGGGTGAAGC
TTGTCCTCCT
back to top