CX671444

Overview
NameCX671444
Unique NameCX671444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10679 contig Csv1_Contig10679:178..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATP4_ARATH (ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana GN=At5g47030 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 5.913e-72
Identity = 130/163 (79.75%), Postives = 149/163 (91.41%), Query Frame = -3
Query:  176 SWKKVNPITEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSALTG 664
            +WKKV P  +PP+TPS +M PRP TP+SIP+KLTVNFVLPY SEL+ KEVDMVI+PASTGQMGVLPGHVPTIAELKPG++SVH+G D KKYF+SSGFAF+HANSVADIIAVEAVP+D IDPS VQKGLAEF QKL+SATTDLEKAEA IGV+VHSA+N+AL+G
Sbjct:   41 AWKKVAPNMDPPQTPSAFMKPRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPGIMSVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASATTDLEKAEAQIGVEVHSAINAALSG 203          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATP4_IPOBA (ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.005e-71
Identity = 130/163 (79.75%), Postives = 148/163 (90.80%), Query Frame = -3
Query:  176 SWKKVNPITEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSALTG 664
            +WKK+ P  +PPKTPS YM PRP TP+SIPSKLTVNFVLPY+SEL+ KEVDMVI+PA+TGQMGVLPGHV TIAELKPGV+SVH+GND  KYFVS GFAFIHANS ADIIAVEAVP+D+ID +LVQKGLAEF QKL++A+TD+EKAEA IGVDVHSALN+ALTG
Sbjct:   38 AWKKLIPNVDPPKTPSAYMAPRPATPSSIPSKLTVNFVLPYSSELAGKEVDMVIIPATTGQMGVLPGHVATIAELKPGVMSVHEGNDVSKYFVSGGFAFIHANSFADIIAVEAVPLDRIDANLVQKGLAEFTQKLNTASTDVEKAEAQIGVDVHSALNAALTG 200          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATP4_PEA (ATP synthase subunit delta', mitochondrial OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.660e-64
Identity = 120/163 (73.62%), Postives = 142/163 (87.12%), Query Frame = -3
Query:  176 SWKKVNPITEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSALTG 664
            +W+KV+P  +PPKTP  ++  RP  P++IP+KLTVNFVLPY+S+L+AKEVD VI+PA+TG+MGVLPGHV TIAELKPGVL+V +G DT KYFVSSGF FIHANSVADIIAVEAVP++Q+D  LVQKGL EF QKL+SATTDLEK EA IG+DV SALNSALTG
Sbjct:   35 AWRKVSPNIDPPKTPLEFLKTRPPVPSTIPTKLTVNFVLPYSSQLAAKEVDSVIIPATTGEMGVLPGHVATIAELKPGVLTVQEGTDTTKYFVSSGFRFIHANSVADIIAVEAVPVNQLDRDLVQKGLQEFTQKLNSATTDLEKREAQIGIDVDSALNSALTG 197          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_KLULA (ATP synthase subunit delta, mitochondrial OS=Kluyveromyces lactis GN=ATP16 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.079e-20
Identity = 54/129 (41.86%), Postives = 81/129 (62.79%), Query Frame = -3
Query:  182 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 568
            L + F LP+ +  S   V  V +PA +GQ+G+L  HVPT+ +L PGV+ V +G+ +KK+FVS GFA +  +S   I +VEA P++   P  V+  LAE  + +SSA  ++  AEA I ++V  AL +AL
Sbjct:   31 LKLQFALPHQTLFSGTPVTQVNLPAKSGQIGILANHVPTVEQLVPGVVEVLEGSSSKKFFVSGGFATVQPDSTLAITSVEAFPLESFSPENVRSLLAEAQKNVSSA-DEVAAAEAAIQLEVLEALQAAL 158          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_DICDI (ATP synthase subunit delta, mitochondrial OS=Dictyostelium discoideum GN=atp5D PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 49/126 (38.89%), Postives = 77/126 (61.11%), Query Frame = -3
Query:  194 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSAL 568
            LT + + P+ +    K+  +V +P + G  GV   HVP IAELKPGV+ + H+  D +K+F+S GFAF++ ++   I  +EAVPIDQ+D   V+ GLA + Q  + A  +  KA A IG++ +  +
Sbjct:   37 LTFSLLSPHQTIYKDKKAQLVTLPGAKGIFGVAKNHVPRIAELKPGVIQINHENGDLEKFFISGGFAFVNPDASCYINTIEAVPIDQLDAEEVKNGLARYTQLYNDAQEENAKAVALIGLETYQQM 162          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_AGABI (ATP synthase subunit delta, mitochondrial OS=Agaricus bisporus GN=atpD PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 49/133 (36.84%), Postives = 81/133 (60.90%), Query Frame = -3
Query:  182 IPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 580
            I  KL ++  LP+ +  S+++V  V +PA +G MG+L  HVP+I  L+PGV+ V + + ++K+FVS GFA +H N+   I  VEA P++      ++  L E N+  + + ++ +K EA I  +V+ AL  AL
Sbjct:   28 ISDKLKLSLALPHKAIFSSQDVVQVNIPAESGDMGILSSHVPSIEPLRPGVVEVVEDSGSQKWFVSGGFATVHPNNRLTINVVEAAPLEDFSIEAIRANLQEANKVAAGSGSEADKMEAQIEAEVYEALQHAL 160          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_ASHGO (ATP synthase subunit delta, mitochondrial OS=Ashbya gossypii GN=ATP16 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 53/129 (41.09%), Postives = 77/129 (59.69%), Query Frame = -3
Query:  182 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 568
            L +NF LP+ +  +   V  V +P  TGQ+G+L  HVP + +L PGV+ V +G+++KK+FVS GFA +  +S   I +VEA P+D      V+  LAE  QK + A      AEA I ++V  AL +AL
Sbjct:   30 LKLNFALPHETLFAGTAVKQVNLPVKTGQIGILANHVPIVEQLVPGVVEVLEGSESKKFFVSGGFATVQPDSTLSITSVEAFPLDSFSAENVRALLAE-AQKNAGAADSRVAAEASIQIEVLEALQAAL 157          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_YEAST (ATP synthase subunit delta, mitochondrial OS=Saccharomyces cerevisiae GN=ATP16 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 52/131 (39.69%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  182 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 574
            S L + F LP+ +  S  EV  V +PA +G++GVL  HVPT+ +L PGV+ V +G+++KK+F+S GFA +  +S   + A+EA P++      ++  LAE  + +SS+    E AEA I V+V   L S L
Sbjct:   30 SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDA-REAAEAAIQVEVLENLQSVL 159          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_BOVIN (ATP synthase subunit delta, mitochondrial OS=Bos taurus GN=ATP5D PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.271e-17
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = -3
Query:  182 QTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 595
            Q P + P +++  F  P     ++  V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +L  A  +  +AE  I ++ + AL  AL
Sbjct:   29 QAPAAGPGQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKAL 167          
BLAST of CX671444 vs. ExPASy Swiss-Prot
Match: ATPD_MOUSE (ATP synthase subunit delta, mitochondrial OS=Mus musculus GN=Atp5d PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.581e-16
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = -3
Query:  182 PTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA*IGVDVHSALNSAL 589
            P + P +++  F  P      +  V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +LS A  +  +AE  I ++ + AL  AL
Sbjct:   31 PAAGPGQMSFTFASPTQVFFDSANVKQVDVPTLTGAFGILASHVPTLQVLRPGLVVVHTEDGTTTKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQIRIEANEALVKAL 167          
The following BLAST results are available for this feature:
BLAST of CX671444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ATP4_ARATH5.913e-7279.75ATP synthase subunit delta', mitochondrial OS=Arab... [more]
ATP4_IPOBA5.005e-7179.75ATP synthase subunit delta', mitochondrial OS=Ipom... [more]
ATP4_PEA2.660e-6473.62ATP synthase subunit delta', mitochondrial OS=Pisu... [more]
ATPD_KLULA3.079e-2041.86ATP synthase subunit delta, mitochondrial OS=Kluyv... [more]
ATPD_DICDI6.860e-2038.89ATP synthase subunit delta, mitochondrial OS=Dicty... [more]
ATPD_AGABI8.959e-2036.84ATP synthase subunit delta, mitochondrial OS=Agari... [more]
ATPD_ASHGO4.446e-1941.09ATP synthase subunit delta, mitochondrial OS=Ashby... [more]
ATPD_YEAST5.807e-1939.69ATP synthase subunit delta, mitochondrial OS=Sacch... [more]
ATPD_BOVIN9.271e-1734.53ATP synthase subunit delta, mitochondrial OS=Bos t... [more]
ATPD_MOUSE1.581e-1635.04ATP synthase subunit delta, mitochondrial OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11B01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11B01-D1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671444 ID=CX671444; Name=CX671444; organism=Citrus sinensis; type=EST; length=666bp
TTTTTTTTTTTTTTTTTCCTTGTTCTCATAATTTATTTTAAGCCTCTGAG
AAAAAACAGTAAAATTATGTTCGACAAATCTTAGTGACTTGCTGATTACA
TGGAGGATGGAAAACCACAATGCAACTCAAAAATAGAAAGCAAAATGAGA
AAAATTTGGAGGTAGAAGAAAATTAGCCTGTGAGAGCAGAGTTGAGTGCA
CTGTGAACATCAACACCTATCTAAGCTTCAGCTTTCTCCAGGTCAGTTGT
AGCTGAACTAAGCTTCTGGTTGAACTCTGCAAGGCCCTTCTGGACCAAGC
TGGGGTCAATTTGGTCGATTGGCACAGCCTCAACAGCGATTATGTCTGCA
ACAGAGTTTGCATGGATAAATGCAAACCCACTGCTAACAAAGTATTTCTT
GGTATCATTACCATCATGAACCGATAAGACTCCAGGCTTTAGTTCTGCAA
TTGTAGGTACATGTCCAGGCAGAACACCCATTTGCCCAGTTGATGCTGGA
ACTATAACCATATCGACCTCCTTAGCGGAGAGCTCAGAGGCGTAGGGAAG
GACGAAGTTGACGGTGAGCTTGGAGGGGATTGAAGTGGGGGTTTGTGGGC
GAGGGGTCATGTAAACCGATGGAGTCTTTGGCGGCTCCGTGATTGGATTC
ACTTTCTTCCATGACT
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