CX671419

Overview
NameCX671419
Unique NameCX671419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10188 contig Csv1_Contig10188:60..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671419 vs. ExPASy Swiss-Prot
Match: Y4105_ARATH (Uncharacterized protein At4g01050 OS=Arabidopsis thaliana GN=At4g01050 PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 6.083e-64
Identity = 138/236 (58.47%), Postives = 164/236 (69.49%), Query Frame = 2 
Query:   77 MEALNPAGLIPLSVLCDRRSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKXXXXXXXXXXXXXXXXXAQALTYEEALQQXXXXXXXXXXXXXFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNK-PKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAY 781
            MEAL  A   P+SVL ++RSEPRK  SL     PK    +    +Q++FL+ F                   A++LTYEEALQQ              I+ + +F T+NPL IAGGV  LAVP VLSQVLNK PKSWGVESA+NAY KLG D +AQLLDIRA  +FRQVGSP+++GLGK+ VS VY G+DKPGFLKKLSLKFK+PENTTL+ILDKFDGNSELVAELV +NGFK+AY
Sbjct:    1 MEALKTATFSPMSVLSEKRSEPRKPFSLPNLFPPK----SQRPISQESFLKRF--NGGLALLTSVLSSATAPAKSLTYEEALQQSMTTSSSFDSDG-LIEGISNFVTDNPLVIAGGVAALAVPFVLSQVLNKKPKSWGVESAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAY 229
The following BLAST results are available for this feature:
BLAST of CX671419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4105_ARATH6.083e-6458.47Uncharacterized protein At4g01050 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_10H11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10H11-O22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671419 ID=CX671419; Name=CX671419; organism=Citrus sinensis; type=EST; length=784bp
AAATTCTACATAGCATGCTGGCTCAAGCATTTCCATCAATTCTTTGAGAG
GCCAAAAGATCATATAAAATTATGCCATGGAGGCCCTCAATCCAGCGGGC
TTGATACCTTTATCGGTTCTTTGTGACAGAAGATCAGAACCCAGAAAAAT
TCAATCACTTTCCACGGCTTCTTTACCCAAACTCGCAACTTCTGCTTCTA
ATAAAACCACCCAACAAAATTTTCTAGAGTGTTTTGCAAAGAGTGTGCAT
GGCGGTTTAGTGCTGTTATCTTCAGTTCTTGGTACTGGTTTAGCTCAAGC
TTTAACATATGAAGAAGCGCTGCAGCAGTCAGCAGGCTCTTCAGCATCTG
ATGTTGATGCAAGTGGATTTATTGACAGCGTAATCAGTTTTGGAACAGAG
AATCCTTTAGCTATAGCTGGTGGTGTCACCATTTTGGCTGTTCCATTAGT
TTTGTCTCAGGTTCTGAACAAGCCTAAGTCATGGGGTGTTGAGTCTGCAA
GGAATGCTTATGCAAAGTTGGGTGACGATGCGAGTGCCCAGTTGCTTGAT
ATAAGAGCTCCCGTGGAATTTCGGCAAGTAGGTAGTCCTGATGTCCGGGG
TTTGGGGAAGAGGCCGGTTTCGATTGTTTACAAAGGTGACGATAAGCCGG
GCTTCTTGAAGAAGCTGTCTTTGAAGTTCAAGGAACCAGAAAATACTACA
TTGTTCATTCTAGACAAATTTGATGGGAACTCTGAACTGGTTGCTGAGTT
GGTCACCATAAATGGATTCAAAAATGCATACACT
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