EY664362

Overview
NameEY664362
Unique NameEY664362
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664362_ssr538 microsatellite EY664362_ssr538:538..549. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7921 contig Csv1_Contig7921:1..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY664362 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.079e-37
Identity = 93/188 (49.47%), Postives = 111/188 (59.04%), Query Frame = 1 
Query:  112 MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPAFQEFNQPPQNQSSLPCDPTNQIKNPFQMNEN-LQTNKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRMSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPFMKHTLSAAT-PFMGQXGA 669
            M+ ++ L    W  SS    E        N  F  F SQQ   KWED SILDY++ + P  QE                       Q N + LQ  + Q WDP+ ML+NLSF+EQKIH+LQDLVHL+VGR  Q+ GR DEL AQQQQLIT DLTSII+QLISTAGSLLP +KH +S A  PF GQ G+
Sbjct:    1 METEDDLCNTNWGSSSSKSREPGSS-DCGNSTFAGFTSQQ---KWEDASILDYEMGVEPGLQE---------------------SIQANVDFLQGVRAQAWDPRTMLSNLSFMEQKIHQLQDLVHLLVGRGGQLQGRQDELAAQQQQLITTDLTSIIIQLISTAGSLLPSVKHNMSTAPGPFTGQPGS 163
The following BLAST results are available for this feature:
BLAST of EY664362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
STOP1_ARATH3.079e-3749.47Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-065-G06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664362 ID=EY664362; Name=EY664362; organism=Citrus sinensis; type=EST; length=820bp
CCACGCGTCCGGAAATGGAACTGTTAAGTTGAATAGCAAAGACAGCATCT
AAGCTAAGTTGAATCTGATTGATTGGGATTTGGATCTGGTACCTGAGAAA
AGGATTTTGAAATGGATCTTAAAGAGGGACTGCGTGCAGAGACTTGGGCG
AAGTCTTCTTTGGCTGAAAATGAGATGTCAAAAAGGATTTCGTCTAATAA
CCCATGTTTTACCGATTTCAATTCACAGCAATACCAGCAGAAGTGGGAAG
ATCCCTCCATCTTAGATTATGACATTAGGATCAATCCAGCATTTCAAGAA
TTCAATCAACCTCCTCAAAACCAATCCTCACTCCCTTGTGACCCCACTAA
CCAAATTAAAAATCCATTCCAGATGAATGAGAATCTCCAAACCAACAAAA
TGCAAGATTGGGATCCAAAAGCAATGCTAAATAATCTTTCATTTTTGGAA
CAAAAGATCCATGAGCTTCAGGATTTGGTGCACTTAATTGTGGGCCGGAT
GAGCCAAATTTTGGGTCGACCAGATGAACTTGTAGCTCAGCAGCAGCAGC
TCATTACTGCAGATCTCACTTCAATTATTGTTCAGTTAATCTCCACAGCT
GGTAGTCTTCTCCCATTCATGAAGCATACCCTCTCTGCAGCTACTCCTTT
CATGGGACAGNCTGGGGCATTTGGNCGGGGTTCCTTTCCTNNCAGGGCTG
GCNTAAGTGATAGCATTCAGGTGCAAAATAGNTGTGCAAAAAAAGGTCTT
ATCAGTCAAACCAATTGATCTAGTCGGTAATAGTGGGACTCAACAAACCA
TGCTGGTGAAGACATGATTT
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