EY664348

Overview
NameEY664348
Unique NameEY664348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664348_ssr238 microsatellite EY664348_ssr238:238..252. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY664348 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.607e-48
Identity = 108/176 (61.36%), Postives = 128/176 (72.73%), Query Frame = 3
Query:  147 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELRNGMVAMLGLVALAFTEFANGGTL 650
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE  NG +AMLGLVALAFTEF  G +L
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSL 195          
BLAST of EY664348 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.302e-33
Identity = 86/197 (43.65%), Postives = 120/197 (60.91%), Query Frame = 3
Query:   78 MAASLATQSMLASPVAARVTGIKRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELRNGMVAMLGLVALAFTEFANGGTL 650
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+ NG  AM+GLVALAFTE+  GG L
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPL 196          
BLAST of EY664348 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.397e-29
Identity = 71/127 (55.91%), Postives = 88/127 (69.29%), Query Frame = 3
Query:  267 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELRNGMVAMLGLVALAFTEFANG 641
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAEL NG  AMLGLVALA TEF  G
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITG 225          
BLAST of EY664348 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.091e-28
Identity = 83/185 (44.86%), Postives = 106/185 (57.30%), Query Frame = 3
Query:   90 LATQSMLASPVAARVTGIKRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELRNGMVAMLGLVALAFTEFANG 641
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AEL NG  AMLGLVALA TE   G
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITG 166          
BLAST of EY664348 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.861e-28
Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = 3
Query:  294 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELRNGMVAMLGLVALAFTEFANG 641
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AEL NG  AM+GLVALA TE   G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of EY664348 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.134e-16
Identity = 59/128 (46.09%), Postives = 69/128 (53.91%), Query Frame = 3
Query:  270 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELRNGMVAMLGLVALAFTEFANG 641
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NG  AM+G  A+   E   G
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of EY664348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA3.607e-4861.36Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL7.302e-3343.65Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU6.397e-2955.91High molecular mass early light-inducible protein ... [more]
ELI9_HORVU1.091e-2844.86Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.861e-2855.56Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA2.134e-1646.09Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-065-F04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664348 ID=EY664348; Name=EY664348; organism=Citrus sinensis; type=EST; length=789bp
CCACGCGTCCGCCCGCCGACCTGAAGCACCCAATTCCCGAATATACTTTG
TTCTGTTTTCTACTTCATAAATTAAAAATGGCCGCATCACTTGCTACTCA
ATCTATGCTGGCAAGTCCTGTAGCAGCTCGTGTGACTGGTATCAAGAGAT
CCGGGGCAAACCAACTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGA
AATGTCAACTTATCCGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCA
GCAGAAAGATGATCAACCAACCATACCGAAAGCTGAGCCTCAGCCACCAA
AGAAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTCGCGTTCAGCGGG
CCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGC
TGCATTGGGGGTGGAGATATCCAAGGGTCAAGATGTGTTTGCCCAGTTAT
CAGACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTT
GCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGA
TGGGTTCATGACTTCAGATGCTGAGTTGCGGAATGGGATGGTTGCTATGC
TGGGCCTTGTTGCTTTGGCTTTCACCGAGTTTGCTAATGGTGGCACCCTT
GATTAAAGCTAATTGTGTTTAGATCTGTAGATCTGGATTTTTTTTTACTA
ATAAATGGGTGAGATCCTACTGAAATAAAATCTCTATTTCTCATGCCATG
CTGATATTCACCCACCATTTCTAGTAAAAAAAAAAAAAA
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