DY305830

Overview
NameDY305830
Unique NameDY305830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6756 contig Csv1_Contig6756:1..599. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY305830 vs. ExPASy Swiss-Prot
Match: NHX2_ARATH (Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.606e-33
Identity = 73/108 (67.59%), Postives = 83/108 (76.85%), Query Frame = 3 
Query:    3 FGLMTKPLIRLLLPHPKHTTN--HILSDPSTPKSLSQPLLEEGQQDSYADLVGP--TVPRPGSLRALLTTPTHTVHYYWRKFDDAFMRPVFGGRGFAPFVPGSPTERS 314
            FG++TKPLIR L+PH K TT+   +LSD STPKS+  PLL+  Q DS+ +L G    VPRP SLR  L  PT TVHYYWR+FDDAFMRPVFGGRGF PFVPGSPTERS
Sbjct:  433 FGMLTKPLIRYLMPHQKATTSTTSMLSDDSTPKSIHIPLLDGEQLDSF-ELPGSHQDVPRPNSLRGFLMRPTRTVHYYWRQFDDAFMRPVFGGRGFVPFVPGSPTERS 539
[Close]
BLAST of DY305830 vs. ExPASy Swiss-Prot
Match: NHX1_ARATH (Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana GN=NHX1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.868e-31
Identity = 68/105 (64.76%), Postives = 81/105 (77.14%), Query Frame = 3 
Query:    3 FGLMTKPLIRLLLPHPKHTTNHILSDPSTPKSLSQPLLEEGQQDSYADLVGP-TVPRPGSLRALLTTPTHTVHYYWRKFDDAFMRPVFGGRGFAPFVPGSPTERS 314
            FG++TKPLI  LLPH   TT+ +LSD +TPKS+  PLL+   QDS+ +  G   VPRP S+R  LT PT TVHYYWR+FDD+FMRPVFGGRGF PFVPGSPTER+
Sbjct:  431 FGMLTKPLISYLLPHQNATTS-MLSDDNTPKSIHIPLLD---QDSFIEPSGNHNVPRPDSIRGFLTRPTRTVHYYWRQFDDSFMRPVFGGRGFVPFVPGSPTERN 531
The following BLAST results are available for this feature:
BLAST of DY305830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NHX2_ARATH2.606e-3367.59Sodium/hydrogen exchanger 2 OS=Arabidopsis thalian... [more]
NHX1_ARATH1.868e-3164.76Sodium/hydrogen exchanger 1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM2CA07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305830 ID=DY305830; Name=DY305830; organism=Citrus sinensis; type=EST; length=601bp
GGTTCGGTTTGATGACTAAACCTCTGATAAGATTACTTCTGCCTCATCCA
AAACACACGACAAACCATATACTATCAGATCCCAGTACTCCAAAATCTCT
GTCGCAGCCACTCCTTGAGGAGGGCCAGCAGGACTCTTACGCTGACCTTG
TTGGCCCTACTGTTCCCCGTCCTGGCAGCTTGCGTGCTCTTCTGACGACC
CCTACACACACGGTTCACTACTACTGGCGCAAGTTTGATGACGCCTTCAT
GCGCCCCGTTTTTGGCGGTCGGGGTTTTGCACCCTTTGTTCCTGGCTCGC
CAACGGAACGAAGCGTCCGTGGAGGACAGTGAGAGAAGGAAAACTGTACC
ATAATTTGGGATGGTGATTTTGCTGGGACGCGTGCATATTCTGTAAATCA
TCCTTGTTGATGTGTATCTTATAAGTAGCTAATTTTCATTTCATTTTCTT
AAACATGAAAACAGTAAGTGTGTTGCATAATGTTTGATGGTTTAATTCTA
TGTAACGTTTGTGTGCAGTGGGATGGTGATTTTGCTGGGACGTGTTGTAA
TTTTACGATGCTTGGGTTGCATATAATGGAAGTTAAATAGGTTTTTGGGC
T
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