EY664334

Overview
NameEY664334
Unique NameEY664334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664334 vs. ExPASy Swiss-Prot
Match: DCAF8_RAT (DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.739e-23
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 2
Query:  104 RPINAARRF----SASEVLMKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI-FDDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 532
            R + ++ RF      + V ++R  L   L GH GCVN + FN  G +L SGSDD  V+ WDW  R+    + SGH  N+FQ + +P + D  +   + DGQVR+ ++       +TKR+ +H+G  +KLA+EP SP    S GED  V
Sbjct:  155 RELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV 302          
BLAST of EY664334 vs. ExPASy Swiss-Prot
Match: DCAF8_PONAB (DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.739e-23
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 2
Query:  104 RPINAARRF----SASEVLMKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI-FDDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 532
            R + ++ RF      + V ++R  L   L GH GCVN + FN  G +L SGSDD  V+ WDW  R+    + SGH  N+FQ + +P + D  +   + DGQVR+ ++       +TKR+ +H+G  +KLA+EP SP    S GED  V
Sbjct:  161 RELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMRARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV 308          
BLAST of EY664334 vs. ExPASy Swiss-Prot
Match: DCAF8_MOUSE (DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.739e-23
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 2
Query:  104 RPINAARRF----SASEVLMKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI-FDDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 532
            R + ++ RF      + V ++R  L   L GH GCVN + FN  G +L SGSDD  V+ WDW  R+    + SGH  N+FQ + +P + D  +   + DGQVR+ ++       +TKR+ +H+G  +KLA+EP SP    S GED  V
Sbjct:  155 RELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV 302          
BLAST of EY664334 vs. ExPASy Swiss-Prot
Match: DCAF8_HUMAN (DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.739e-23
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 2
Query:  104 RPINAARRF----SASEVLMKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI-FDDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 532
            R + ++ RF      + V ++R  L   L GH GCVN + FN  G +L SGSDD  V+ WDW  R+    + SGH  N+FQ + +P + D  +   + DGQVR+ ++       +TKR+ +H+G  +KLA+EP SP    S GED  V
Sbjct:  161 RELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV 308          
BLAST of EY664334 vs. ExPASy Swiss-Prot
Match: DC8L1_XENLA (DDB1- and CUL4-associated factor 8-like protein 1 OS=Xenopus laevis GN=dcaf8l1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.127e-22
Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  149 MKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI-FDDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 532
            ++R +L   L GH GCVN + FN  G  L SGSDD  V+ WDW  R+    + SGH  N+FQ + +P + D  +   + DGQVR+ ++       +TKR+ +H+G  +KLA+EP SP    S GED  V
Sbjct:  183 VQRFHLLHGLDGHSGCVNTLHFNQRGTCLASGSDDLKVVVWDWVRRKPVLEFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATHCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV 311          
BLAST of EY664334 vs. ExPASy Swiss-Prot
Match: DC8L1_XENTR (DDB1- and CUL4-associated factor 8-like protein 1 OS=Xenopus tropicalis GN=dcaf8l1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.307e-22
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  149 MKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI-FDDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 532
            ++R  L   L GH GCVN + FN  G +L SGSDD  V+ WDW  R+    + SGH  N+FQ + +P + D  +   + DGQVR+ ++       +TKR+ +H+G  +KLA+E  SP    S GED  V
Sbjct:  186 VQRFRLLHGLDGHSGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRKPVLEFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATHCCKNTKRVAQHKGASHKLALERDSPCTFLSAGEDAVV 314          
BLAST of EY664334 vs. ExPASy Swiss-Prot
Match: DCAF6_MOUSE (DDB1- and CUL4-associated factor 6 OS=Mus musculus GN=Dcaf6 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.543e-22
Identity = 53/155 (34.19%), Postives = 84/155 (54.19%), Query Frame = 2
Query:   74 DIYKREMGLFRPINAARRFSASEVLMKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFDDGRMDTK-RLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 535
            D+ KR +GL  P     R+      ++R+ L   L+ H GCVN + +N TG++++SGSDD  ++  +   R+   +  SGH  NIF  + +P TDD++I++ S DG +    I  D   + + +   H G  Y++   P  PY   SCGEDG V+
Sbjct:   13 DVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTDDKQIVSCSGDGVIFYTNIEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVR 167          
BLAST of EY664334 vs. ExPASy Swiss-Prot
Match: DC8L2_HUMAN (DDB1- and CUL4-associated factor 8-like protein 2 OS=Homo sapiens GN=DCAF8L2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.628e-21
Identity = 56/155 (36.13%), Postives = 85/155 (54.84%), Query Frame = 2
Query:   71 TDIYKREMGLFRPINAARRFSASEVLMKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFDDGRM-DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 532
            T +++R++G  RP         +   ++R  L  +L  H GCVN V FN  G  L S  DD  VI WDW  +R   ++ SGH +N+FQ + +P   D  +   + DGQVR+ ++ +     +TK + +H+G  +KLA+EP SPY   + GED  V
Sbjct:  162 TALHQRQLGS-RP-RFVYEACGARAFVQRFRLQYRLADHVGCVNTVHFNQRGTRLASSGDDLKVIVWDWVRQRPVLNFESGHTNNVFQAKFLPNCGDSTLAMCARDGQVRVAELINASYFNNTKCVAQHRGPAHKLALEPDSPYKFLTSGEDAVV 314          
BLAST of EY664334 vs. ExPASy Swiss-Prot
Match: DCAF6_PONAB (DDB1- and CUL4-associated factor 6 OS=Pongo abelii GN=DCAF6 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.736e-21
Identity = 51/155 (32.90%), Postives = 84/155 (54.19%), Query Frame = 2
Query:   74 DIYKREMGLFRPINAARRFSASEVLMKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFDDGRMDTK-RLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 535
            D+ KR +GL  P     R+      ++R+ L   L+ H GCVN + +N TG++++SGSDD  ++  +   R+   +  SGH  NIF  + +P T+D++I++ S DG +    +  D   + + +   H G  Y++   P  PY   SCGEDG V+
Sbjct:   13 DVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVR 167          
BLAST of EY664334 vs. ExPASy Swiss-Prot
Match: DCAF6_HUMAN (DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.736e-21
Identity = 51/155 (32.90%), Postives = 84/155 (54.19%), Query Frame = 2
Query:   74 DIYKREMGLFRPINAARRFSASEVLMKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFDDGRMDTK-RLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 535
            D+ KR +GL  P     R+      ++R+ L   L+ H GCVN + +N TG++++SGSDD  ++  +   R+   +  SGH  NIF  + +P T+D++I++ S DG +    +  D   + + +   H G  Y++   P  PY   SCGEDG V+
Sbjct:   13 DVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVR 167          
The following BLAST results are available for this feature:
BLAST of EY664334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DCAF8_RAT1.739e-2338.51DDB1- and CUL4-associated factor 8 OS=Rattus norve... [more]
DCAF8_PONAB1.739e-2338.51DDB1- and CUL4-associated factor 8 OS=Pongo abelii... [more]
DCAF8_MOUSE1.739e-2338.51DDB1- and CUL4-associated factor 8 OS=Mus musculus... [more]
DCAF8_HUMAN1.739e-2338.51DDB1- and CUL4-associated factor 8 OS=Homo sapiens... [more]
DC8L1_XENLA1.127e-2241.09DDB1- and CUL4-associated factor 8-like protein 1 ... [more]
DC8L1_XENTR7.307e-2240.31DDB1- and CUL4-associated factor 8-like protein 1 ... [more]
DCAF6_MOUSE9.543e-2234.19DDB1- and CUL4-associated factor 6 OS=Mus musculus... [more]
DC8L2_HUMAN1.628e-2136.13DDB1- and CUL4-associated factor 8-like protein 2 ... [more]
DCAF6_PONAB4.736e-2132.90DDB1- and CUL4-associated factor 6 OS=Pongo abelii... [more]
DCAF6_HUMAN4.736e-2132.90DDB1- and CUL4-associated factor 6 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-065-E02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664334 ID=EY664334; Name=EY664334; organism=Citrus sinensis; type=EST; length=908bp
ACTCACTCTGTCGATAGAGTGAAATTCTGCTAAAATGGGGACGAATTTGA
AGCGAAGTAAAGATGGGTTTACGGATATTTACAAGAGGGAGATGGGTTTA
TTTCGGCCCATAAACGCAGCTCGCAGATTCTCTGCTTCAGAGGTTCTTAT
GAAGCGAATCAACCTTTGTGGGAAGTTACATGGTCACAAGGGTTGTGTGA
ATGCAGTAGAATTCAACTCCACTGGTGATTTTCTTGTTTCGGGTTCTGAT
GACAAGCTTGTCATATTTTGGGATTGGAAAGATAGGAGAGAGAAATTCTC
ATATCTATCTGGCCATCTTGATAACATATTCCAAACACGAATTATGCCAT
TTACTGATGATCGGAAAATAATAACATCGTCCGCCGACGGCCAGGTGAGG
CTTGGCCAAATCTTTGATGATGGACGGATGGATACAAAAAGATTGGGAAA
GCACCAAGGCCGTGTGTACAAGCTAGCTGTAGAGCCAGGAAGTCCCTACA
TTATCTATAGCTGTGGCGAAGATGGNTTTGTTCAACATGTTGGTCAATCT
TGTTATATGAATCTTGTAAAGCCTCTCATTCTTTATATTAGTTACAGAAT
TACTTTTTCTTTTTTGGGGCAGTTTGATCTGCGATGTGACAGTGCAACAC
GGCTTTTCTACTGCTCCTCATTTCCAGAAACAGCAAGCACCCTATGACAG
CATAAGGGTTGATGCCTTGGTATTTGCACCGAGAATCCAATTTACTTTGC
CGAGGAGGTTCGATGATTTTCACTGGTTTTGACATAGAAATGCCATTGGG
TTTCCACATTTATTCAAATCCCCCGGGGACCGTTTGCCCCCGTTTTGGTT
GGGAAACATATTCTTTACTGGGATGGCTTTCTAACAAAGGGACTGGTTTT
CTACACGA
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