CX671330

Overview
NameCX671330
Unique NameCX671330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671330 vs. ExPASy Swiss-Prot
Match: FDL1_ARATH (F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.456e-13
Identity = 70/247 (28.34%), Postives = 109/247 (44.13%), Query Frame = 2
Query:   47 NIDKNIIRKLTLMEAARTCVLSSRWRYLWTFTTALDFDGIREILPRTKRYFREYKFVRWVNKVLVLHRGSNVSQFRVSFYLSSSLEGVITNWIYKALAKTVQNFELDFQYNSGHHYTFPQEIYNSLK---------------GVRGLSSIKSLRSICLSAVNVTGEILEFFIHNCPLLDELCVKDSIDLVSLKVVGSSVRLNSLDIQYCSFMKDIEISTPNLFSFKYYGPKIELHIENVPQLVELSV 742
            +I +NI+ +L++ +A RT VLSS+WRY W+  T L FD  + + P   R   E   VR++  VL+LH+G  + +F++S          I  W+       ++  EL  +   G  +  P  ++N LK                 +G S +KSL    L  + V  E++E  I  CPLL+ L +     LV                        + IS PNL      G   ++ +EN P+LV +SV
Sbjct:   14 SIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDE-KCVSPSNDRCVVETNLVRFITGVLLLHQGP-IHKFQLSTSFKQCRPD-IDQWLLFLSRNGIK--ELVLKLGEG-EFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLN---LHQILVAPEVIESLISGCPLLEFLSLSYFDSLV------------------------LSISAPNLMYLYLDGEFKDIFLENTPKLVAISV 227          
BLAST of CX671330 vs. ExPASy Swiss-Prot
Match: FDL41_ARATH (Putative F-box/FBD/LRR-repeat protein At5g62970 OS=Arabidopsis thaliana GN=At5g62970 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.073e-12
Identity = 68/279 (24.37%), Postives = 120/279 (43.01%), Query Frame = 2
Query:   44 DNIDKNIIRKLTLMEAARTCVLSSRWRYLWTFTTALDFD---------GIREILPRTKRYFRE---------YKFVRWVNKVLVLHRGSNVSQFRVSFYLSSSLEGVITNWIYKALAKTVQNFELDFQYNSGHHYTFPQEIY------------NSLKGVRGLSSIKSLRSICLSAVNV-TGEILEFFIHNCPLLDELCVK----DSIDLVSLKVVGSSVRLNSLDIQYCSFMKDIEISTPNLFSFKY--YGPKIELHIENVPQLVELSVRADHTVEDM 769
            D +   I+  L    A  T VLS +W++LW     L++D           R  LP+ K    E         ++   ++ K L LH    +   R+ F+        I  W+  A+++  Q   +DF     H+   P+ +Y            N L  V  + S+ SL+ + L  V    GE L+  + NC +L++L V+    D++  + + ++ S + L+    +YC++ +   I TP+L  FK           IEN+P+L E ++ A H  + +
Sbjct:   10 DELLVKILSFLPFKFAITTSVLSKQWKFLWMRVPKLEYDEDSMYSFEYSFRYFLPKAKEVDSETYSIVSESGHRMRSFIEKNLPLHSSPVIESLRLKFFTEVFQPEDIKLWVEIAVSRCAQELSVDFFPKEKHNALLPRNLYTCKSLVTLKLRNNILVDVPHVFSLPSLKILHLERVTYGDGESLQRLLSNCSVLEDLVVELDTGDNVRKLDV-IIPSLLSLSFGMSRYCAY-EGYRIDTPSLKYFKLTDLSKTFSGLIENMPKLEEANITARHNFKKL 286          
BLAST of CX671330 vs. ExPASy Swiss-Prot
Match: FBL39_ARATH (F-box/LRR-repeat protein At2g42730 OS=Arabidopsis thaliana GN=At2g42730 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12
Identity = 72/265 (27.17%), Postives = 123/265 (46.42%), Query Frame = 2
Query:   44 DNIDKNIIRKLTLMEAARTCVLSSRWRYLWTFTTALDFDGIREILPRTKRYFREY--KFVRWVNKVLVLHRGSNVSQFRVSFYL---SSSLEGVITNWIYKALAKTVQNFELDFQYNSGHHYTFPQEIYNS-----LKGVRGLS-------SIKSLRSICLSAVNVTG--EILEFFIHNCPLLDELCVKDSIDLVSLKVVGSSVRLNSLDIQYCSFMKDIEISTPNLFSFKYYG------PKIELHIENVPQLVE--LSVRADHT 757
            D +   I+  ++  EA  T VLS RW+ ++   + LD D  R+ +P+TK+   E    ++ +V+K+L   RGS++ +  +  ++     +    I +WI   L   V + ++ F    G     P  I+ S     L+  RG +       S+  LR++CL +VN  G   ++   I  CP+L+EL V++    V      SS  L  L I++      I +  PNL  +K+ G      P ++L       L+E  L++R D T
Sbjct:   12 DEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDIDD-RQSVPKTKQNRIEIHRNYMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGVMDLDV-FITLKGKSPPVPAMIFKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFVGGHNVVGTLISRCPVLEELVVEER-RCVDWTCSVSSPSLKRLHIRFDRKFTSISLDAPNLIYYKHSGYVLGKYPNVKL-----DSLIEARLNLRMDET 268          
The following BLAST results are available for this feature:
BLAST of CX671330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FDL1_ARATH5.456e-1328.34F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidop... [more]
FDL41_ARATH2.073e-1224.37Putative F-box/FBD/LRR-repeat protein At5g62970 OS... [more]
FBL39_ARATH2.708e-1227.17F-box/LRR-repeat protein At2g42730 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_10D10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10D10-G20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671330 ID=CX671330; Name=CX671330; organism=Citrus sinensis; type=EST; length=836bp
CAAGGACTTGTGTTCTTTCAGCCTCCATTAAAGTTAATTTCGAGATAATA
TTGATAAGAATATCATCAGGAAGTTGACTTTAATGGAGGCTGCAAGGACT
TGTGTTCTTTCGAGTAGATGGAGATATTTGTGGACTTTTACCACTGCTCT
TGACTTTGATGGAATAAGAGAAATTTTACCTCGAACAAAAAGATACTTCC
GCGAGTATAAGTTCGTTAGATGGGTGAATAAAGTCTTAGTATTGCATCGA
GGTTCAAATGTGAGTCAGTTTAGAGTAAGTTTTTATTTGTCTTCTTCACT
GGAAGGTGTTATTACTAACTGGATTTACAAAGCACTGGCAAAAACAGTTC
AAAATTTTGAGCTGGATTTCCAGTATAATTCTGGTCACCATTACACGTTT
CCACAAGAGATTTATAACAGTCTAAAAGGTGTCCGTGGTTTGTCTAGTAT
TAAGTCTTTACGATCCATTTGCCTTTCTGCTGTGAACGTCACTGGAGAGA
TTCTTGAGTTTTTTATACACAACTGTCCTCTTCTTGATGAATTATGTGTA
AAAGACTCCATAGATCTAGTAAGTTTAAAGGTTGTTGGATCATCAGTCCG
ATTGAATTCCCTAGACATTCAGTATTGCAGTTTCATGAAAGACATTGAAA
TTTCTACCCCAAATCTTTTTTCTTTCAAATATTATGGCCCAAAAATCGAG
TTACACATTGAGAATGTTCCCCAACTTGTTGAATTATCCGTACGTGCCGA
TCACACAGTTGAAGACATGTTTTTAGTTGCACCGTTGGTATGCTATTTCC
CTCAATTGACGATGCTTGAGTTGGACAGTTGCAATG
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