CX671318
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 4.315e-56 Identity = 115/160 (71.88%), Postives = 123/160 (76.88%), Query Frame = -2 Query: 359 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 838 APGGHLGRF+VWTKSAFEKLD IYG FDK SEKK GYVLPRSKMVNADLARIINSDEVQSVV PI+ KRA PYAKTARRMSLLAEA+RV KPI+KEEA+ IK+AGKAWYQTMISDSDYTEF+NF+KWLGVSQ Sbjct: 249 APGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 6.231e-55 Identity = 109/160 (68.12%), Postives = 123/160 (76.88%), Query Frame = -2 Query: 359 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 838 APGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDE+QSVV PIK + KRA PYAKTA+RMSLLAEAQRV K +TKEEA AIK+AGK+WY+TMISDSDYTEF+NF+KWLG SQ Sbjct: 247 APGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2) HSP 1 Score: 213.001 bits (541), Expect = 1.813e-54 Identity = 111/160 (69.38%), Postives = 121/160 (75.62%), Query Frame = -2 Query: 359 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 838 APGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDEVQSVV PIK KRA PYAKTA+RMSLLAEA RV K +TKEEA AIK+AGKAWYQTMISDSDYTEF+NF+KWLG SQ Sbjct: 248 APGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20 Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = -2 Query: 626 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKR 838 APGGHLGRFI+WTKSAFE+LD +G F K S +KKGY LPR + NAD+ R++NSDE+Q+ VR K VKR Sbjct: 240 APGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKR 310
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.571e-18 Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = -2 Query: 518 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 838 APGGH+GRF +WT+SAF KLD++YG + K ++ K Y LP KM N DL RI+ S E+Q +R +VKR PYAKTARR ++L + + + Sbjct: 240 APGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.571e-18 Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = -2 Query: 518 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 838 APGGH+GRF +WT+SAF KLD++YG + K ++ K Y LP KM N DL RI+ S E+Q +R +VKR PYAKTARR ++L + + + Sbjct: 245 APGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18 Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = -2 Query: 524 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 838 APGGH+GRF +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R PYAKT RR ++L +A+ Sbjct: 241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5) HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18 Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = -2 Query: 524 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 838 APGGH+GRF +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R PYAKT RR ++L +A+ Sbjct: 241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 91.2781 bits (225), Expect = 7.955e-18 Identity = 52/135 (38.52%), Postives = 72/135 (53.33%), Query Frame = -2 Query: 434 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKA 838 APGGH+GRF +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R PYAKT RR ++L +A+ + K EAAA A K+ Sbjct: 241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARN----------HKLRVKKLEAAAAALAAKS 365
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 1.039e-17 Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = -2 Query: 524 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 838 APGGH+GRF +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R PYAKT RR ++L +A+ Sbjct: 241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345 The following BLAST results are available for this feature:
BLAST of CX671318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671318 ID=CX671318; Name=CX671318; organism=Citrus sinensis; type=EST; length=881bpback to top |