CX671318

Overview
NameCX671318
Unique NameCX671318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.315e-56
Identity = 115/160 (71.88%), Postives = 123/160 (76.88%), Query Frame = -2
Query:  359 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 838
            APGGHLGRF+VWTKSAFEKLD IYG FDK SEKK GYVLPRSKMVNADLARIINSDEVQSVV PI+   KRA                 PYAKTARRMSLLAEA+RV           KPI+KEEA+ IK+AGKAWYQTMISDSDYTEF+NF+KWLGVSQ
Sbjct:  249 APGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408          
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.231e-55
Identity = 109/160 (68.12%), Postives = 123/160 (76.88%), Query Frame = -2
Query:  359 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 838
            APGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDE+QSVV PIK + KRA                 PYAKTA+RMSLLAEAQRV           K +TKEEA AIK+AGK+WY+TMISDSDYTEF+NF+KWLG SQ
Sbjct:  247 APGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406          
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.813e-54
Identity = 111/160 (69.38%), Postives = 121/160 (75.62%), Query Frame = -2
Query:  359 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 838
            APGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDEVQSVV PIK   KRA                 PYAKTA+RMSLLAEA RV           K +TKEEA AIK+AGKAWYQTMISDSDYTEF+NF+KWLG SQ
Sbjct:  248 APGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407          
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = -2
Query:  626 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKR 838
            APGGHLGRFI+WTKSAFE+LD  +G F K S +KKGY LPR  + NAD+ R++NSDE+Q+ VR  K  VKR
Sbjct:  240 APGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKR 310          
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.571e-18
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = -2
Query:  518 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 838
            APGGH+GRF +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR                  PYAKTARR ++L + + +
Sbjct:  240 APGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346          
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.571e-18
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = -2
Query:  518 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 838
            APGGH+GRF +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR                  PYAKTARR ++L + + +
Sbjct:  245 APGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351          
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  524 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 838
            APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  524 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 838
            APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 7.955e-18
Identity = 52/135 (38.52%), Postives = 72/135 (53.33%), Query Frame = -2
Query:  434 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKA 838
            APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+               + K EAAA   A K+
Sbjct:  241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARN----------HKLRVKKLEAAAAALAAKS 365          
BLAST of CX671318 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.039e-17
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  524 APGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 838
            APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
The following BLAST results are available for this feature:
BLAST of CX671318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL4_PRUAR4.315e-5671.8860S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH6.231e-5568.1360S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH1.813e-5469.3860S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4_DICDI1.311e-2063.3860S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4B_XENLA3.571e-1842.9960S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4A_XENLA3.571e-1842.9960S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4_PONAB6.091e-1842.8660S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4_HUMAN6.091e-1842.8660S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_RAT7.955e-1838.5260S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4_MOUSE1.039e-1742.8660S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10D03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10D03-G6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671318 ID=CX671318; Name=CX671318; organism=Citrus sinensis; type=EST; length=881bp
TTTTTTTTTTTTTTTTTAAAGCAAAAGAAAAGAGCATCAATCCAATTTTA
GCTTATGACATCAATCAAATGATAAGAGCAGCATTATAATTTTTAAGTAT
AAATAGTACCATTAAGACAATAAATCCACCTCCTAAAACATATAACTCCA
ATTCTAACTTCAAAGAAAGTTCTTTCACCTTGCCCATAAAGACAAAAACG
CTGGGAGGAAAAACATTGACCATTCAGCTTATCTTCCTTCCAAACATTCT
CATCCATGACTCAAAACAGCAAAAGATACTAAAATTCAACAGCAAATCCA
CAAAGATTAACAAGATATTGTCTCAAAAATCAAAATTTAAAAACCAACAA
TCAGATTACTGAGAAACACCAAGCCACTTCGAGAAGTTCTCGAACTCGGT
ATAATCACTGTCTGAGATCATAGTCTGGTACCATGCCTTGCCGGCAGACT
TGATTGCAGCTGCCTCCTCCTTAGTGATGGGCTTCCTCTTCTTGTCGAGC
TTCTCCTTCTTAGCTTTAACCCGTTGTGCCTCAGCCAAAAGTGACATCCG
TCGAGCAGTCTTAGCATATGGGTTCAACCTCAACAGAGTATTCAAGTTCT
TGAGAGGATTCTTCTTCATCGGAGCCCTCTTAACCTCCGTCTTAATCGGC
CTGACAACAGACTGCACCTCATCCGAGTTAATAATCCTAGCCAAGTCAGC
GTTGACCATCTTGGAACGAGGCAGCACATAACCCTTCTTCTTCTCGGAAC
CCTTATCAAACTTACCATAAATCTCATCAAGCTTCTCAAAAGCCGATTTA
GTCCAAACAATAAACCGCCCAAGATGGCCACCCGGCGCCAGCTTCAACAA
GTTCAATCTCTCAACATTCACAACCTCAACA
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