EY664313

Overview
NameEY664313
Unique NameEY664313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664313 vs. ExPASy Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 4.203e-49
Identity = 100/168 (59.52%), Postives = 124/168 (73.81%), Query Frame = 3
Query:  159 PISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSLVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERDANQNGLQ 662
            PIS    P+      SG  + ++H S    F G S+   R + + + R+      + MA +P IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDITGFYMID+EG LQSVDVSAKFVNG+P+ IEAKY+MR+PREWDRFMRFMER +  NGLQ
Sbjct:   13 PISARAQPRRCPAGSSGGPSQSLHSS----FGGVSLQCRRTKPASLHRSRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQANGLQ 176          
BLAST of EY664313 vs. ExPASy Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.490e-49
Identity = 103/165 (62.42%), Postives = 124/165 (75.15%), Query Frame = 3
Query:  177 HPQSRSPSLSGIV--TWAVHGSAQSPFNGQSVHMPRMRLSLVTRNSKVSG-PITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERDANQNGLQ 662
            H Q   P  SGIV  + +V     S F G  V +PR + S  T    +    ITM VKP +QFIQGTDE+T+PDVKLT+SRDGSNGMA+FSF +PSVFDSSGE+G+ITG YMIDEEG +QS DV+A+FVNG+P  I AK+IMRSP+EWDRFMRFMER ++QNGLQ
Sbjct:   15 HSQRNVPR-SGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQ 178          
BLAST of EY664313 vs. ExPASy Swiss-Prot
Match: PSB28_OSTTA (Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus tauri GN=psb28 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 61/121 (50.41%), Postives = 91/121 (75.21%), Query Frame = 3
Query:  297 TRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERDANQNGL 659
            +++++ S  +      +IQF++G +E  VP+V+LT+S+DGSNG A F FS+P VF++    GDITG ++ DEEG + +VDV+AKFVNG+P+ IEA+Y+M++  +W+RFMRFMER A  NGL
Sbjct:   24 SKSARRSVVVRAGTTTSIQFVKGQNETAVPEVRLTRSKDGSNGTAFFIFSDPDVFENGQ--GDITGMFLTDEEGEMSTVDVNAKFVNGKPTGIEARYVMKTEADWNRFMRFMERYAEDNGL 142          
BLAST of EY664313 vs. ExPASy Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 62/105 (59.05%), Postives = 81/105 (77.14%), Query Frame = 3
Query:  348 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERDANQNGL 659
            IQFI+G DE  +PDV+LT+SRDGS G A F F  P++ D S+ + G+ITG Y+ID+EGTL++ DV+A+F+NG+P  IE+ YIM+SP  WDRFMRFMER    NGL
Sbjct:    5 IQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGL 109          
BLAST of EY664313 vs. ExPASy Swiss-Prot
Match: PSB28_PHATR (Photosystem II reaction center psb28 protein OS=Phaeodactylum tricornutum GN=psb28 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.169e-29
Identity = 61/105 (58.10%), Postives = 80/105 (76.19%), Query Frame = 3
Query:  348 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERDANQNGL 659
            IQFI+G DE  +PDV+LT+S+DGS G A F F  P++ D ++ + G+ITG Y+IDEEG L++ DV+A+FVNG+P  IE+ YIM+SP  WDRFMRFMER    NGL
Sbjct:    5 IQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGL 109          
BLAST of EY664313 vs. ExPASy Swiss-Prot
Match: PSB28_PORYE (Photosystem II reaction center psb28 protein OS=Porphyra yezoensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.833e-29
Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = 3
Query:  345 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERDANQNGL 659
            TIQFIQG +E  VPDV+LT+SRDGS G A F F+ P + D+S  + G+ITG Y++D EG + + DV+AKF+NG+P  IEA ++++SP +WDRFMRFMER A  NGL
Sbjct:    3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQIITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFMERYAQDNGL 108          
BLAST of EY664313 vs. ExPASy Swiss-Prot
Match: PSB28_PORPU (Photosystem II reaction center psb28 protein OS=Porphyra purpurea GN=psb28 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.833e-29
Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = 3
Query:  345 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERDANQNGL 659
            TIQFIQG +E  VPDV+LT+SRDGS G A F F+ P + D+S  + G+ITG Y++D EG + + DV+AKF+NG+P  IEA ++++SP +WDRFMRFMER A  NGL
Sbjct:    3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQIITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFMERYAQDNGL 108          
BLAST of EY664313 vs. ExPASy Swiss-Prot
Match: PSB28_GUITH (Photosystem II reaction center psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.699e-29
Identity = 62/105 (59.05%), Postives = 79/105 (75.24%), Query Frame = 3
Query:  348 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERDANQNGL 659
            IQFIQG +E  +PDV+LT+SRDGS G A F F+ P V ++   + G+ITG Y+IDEEG L + DV+A+FVNG+P  IEA YIM+S  +WDRFMRFMER +  NGL
Sbjct:    4 IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQLVTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGL 108          
BLAST of EY664313 vs. ExPASy Swiss-Prot
Match: PSB28_THAPS (Photosystem II reaction center psb28 protein OS=Thalassiosira pseudonana GN=psb28 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.076e-28
Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = 3
Query:  348 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERDANQNGL 659
            IQFI+G DE  +PDV+LT+SRDGS G A F F   ++ + S  + G+ITG YMIDEEG L++ DVSA+FVNG+P  +E+ YIM+SP  WDRFMRFMER    NGL
Sbjct:    5 IQFIKGIDEKVLPDVRLTRSRDGSTGTATFLFKNANLINKSLALNGEITGMYMIDEEGILETRDVSARFVNGKPQAVESIYIMKSPEAWDRFMRFMERYGESNGL 109          
BLAST of EY664313 vs. ExPASy Swiss-Prot
Match: PSB28_GRATL (Photosystem II reaction center psb28 protein OS=Gracilaria tenuistipitata var. liui GN=psb28 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.836e-28
Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = 3
Query:  348 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERDANQNGL 659
            IQFI+G +E  V DV LT+SRDGS G A F F+ P +  S  E  GDITG Y+ D+EG L + DVSAKF+NG+P  +EA YI++SP+EWDRFMRFME+ AN+N L
Sbjct:    4 IQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILKSGMEDKGDITGMYLKDDEGELMTRDVSAKFINGKPQAVEAIYIIKSPQEWDRFMRFMEKYANENKL 108          
The following BLAST results are available for this feature:
BLAST of EY664313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PSB28_ORYSJ4.203e-4959.52Photosystem II reaction center PSB28 protein, chlo... [more]
PSB28_ARATH5.490e-4962.42Photosystem II reaction center PSB28 protein, chlo... [more]
PSB28_OSTTA2.562e-3050.41Photosystem II reaction center psb28 protein, chlo... [more]
PSB28_ODOSI2.562e-3059.05Photosystem II reaction center psb28 protein OS=Od... [more]
PSB28_PHATR2.169e-2958.10Photosystem II reaction center psb28 protein OS=Ph... [more]
PSB28_PORYE2.833e-2957.55Photosystem II reaction center psb28 protein OS=Po... [more]
PSB28_PORPU2.833e-2957.55Photosystem II reaction center psb28 protein OS=Po... [more]
PSB28_GUITH3.699e-2959.05Photosystem II reaction center psb28 protein OS=Gu... [more]
PSB28_THAPS1.076e-2859.05Photosystem II reaction center psb28 protein OS=Th... [more]
PSB28_GRATL1.836e-2859.05Photosystem II reaction center psb28 protein OS=Gr... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-065-C02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664313 ID=EY664313; Name=EY664313; organism=Citrus sinensis; type=EST; length=927bp
AGTGAATGGTTCTCCTTCTTACACATAACTCTCCCTCGTCTCAACACAAC
ACCTAACTCTCTCTCTCTCTCTTTGGCTACCTCCTTCTTTCTCCGACTCC
GTCTCTGCTTCAGTGTCTTTGTGCAATGGCAGCTCTGCGGTCTCTTGCAT
TAGCCTCTCCAATCTCACACTGTTGGCACCCACAATCCCGCTCTCCCTCT
CTCTCTGGTATTGTAACATGGGCTGTGCATGGAAGTGCACAATCACCATT
CAACGGCCAATCTGTACATATGCCTCGTATGCGTTTGTCCCTGGTAACAC
GAAATTCTAAGGTATCTGGACCCATAACGATGGCGGTGAAACCAACAATT
CAGTTCATCCAAGGAACTGATGAATTGACAGTTCCGGATGTGAAGCTAAC
AAAATCAAGAGATGGTTCAAACGGTATGGCCATATTCAGTTTTAGTGAAC
CCTCCGTTTTTGACTCGTCCGGTGAAATTGGTGATATCACCGGATTTTAC
ATGATTGATGAGGAGGGAACTCTTCAATCAGTTGATGTAAGTGCCAAATT
TGTCAATGGGAGACCTTCTAGGATTGAAGCAAAGTATATCATGCGGTCTC
CCCGAGAGTGGGATAGGTTCATGAGGTTCATGGAGCGGGATGCCAATCAA
AATGGCTTGCAATTTGTCAAGAAATGAAGCATTTTTTTTTCTTCCTCCTG
CTTTGCTTTACCCTATAAATCTTGGGTTTTGGGTATTTGGGCCAAGCAAT
GGGGAAAGCCTTGCTTGCCACCCTTTAAATTGGATGCAAACCCTTTATGC
TCCTTTCTTTCACATATTTTGCTGCTGAAAAAAAAAAAAAAAAAAAAAAA
AAGGGCCGGCGGTTTAAGGACCAAGTCTACTCCCGGGCTGGCAATGATAG
TTTTTTTTAGGGCCCCAAATAAATCCG
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