CX671297

Overview
NameCX671297
Unique NameCX671297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10695 contig Csv1_Contig10695:1251..2157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671297 vs. ExPASy Swiss-Prot
Match: FATB_GOSHI (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.520e-48
Identity = 91/131 (69.47%), Postives = 109/131 (83.21%), Query Frame = -3
Query:  513 DSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKDAHNFGNVGPIPAE 905
            DS+KL KL DSTA++V +GLTP+WSDLDVNQHVNNVKYIGWILESAP  ILESH+L+++TLEYRRECGRDSVLQSLT VSD +  N VN+G   CQHLLRL++GAE++R RT WRPK A +  N+  I A+
Sbjct:  281 DSQKLVKLDDSTAEHVCKGLTPKWSDLDVNQHVNNVKYIGWILESAPLPILESHELSALTLEYRRECGRDSVLQSLTTVSDSNTENAVNVGEFNCQHLLRLDDGAEIVRGRTRWRPKHAKSSANMDQITAK 411          
BLAST of CX671297 vs. ExPASy Swiss-Prot
Match: FATB_UMBCA (Lauroyl-acyl carrier protein thioesterase, chloroplastic OS=Umbellularia californica GN=FATB1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.318e-39
Identity = 81/129 (62.79%), Postives = 96/129 (74.42%), Query Frame = -3
Query:  513 RKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKDAHNFGNVGPIPAE 899
            +KL KL DSTADY++ GLTPRW+DLDVNQHVNN+KY+ W+ E+ P  I ESH ++S TLEYRREC RDSVL+SLT VS    G     G V C HLL+LE G+EVLRARTEWRPK   +F  +  IPAE
Sbjct:  256 KKLQKLNDSTADYIQGGLTPRWNDLDVNQHVNNLKYVAWVFETVPDSIFESHHISSFTLEYRRECTRDSVLRSLTTVS----GGSSEAGLV-CDHLLQLEGGSEVLRARTEWRPKLTDSFRGISVIPAE 379          
BLAST of CX671297 vs. ExPASy Swiss-Prot
Match: FATB_CINCA (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.249e-39
Identity = 80/131 (61.07%), Postives = 98/131 (74.81%), Query Frame = -3
Query:  507 RKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKDAHNFGNVGPIPAEST 899
            +K  KL DSTADY++ GLTPRW+DLD+NQHVNN+KY+ WILE+ P  I ESH ++S T+EYRREC  DSVLQSLT VS    G     G V C+HLL+LE G+EVLRA+TEWRPK   +F  +  IPAES+
Sbjct:  256 KKPQKLNDSTADYIQGGLTPRWNDLDINQHVNNIKYVDWILETVPDSIFESHHISSFTIEYRRECTMDSVLQSLTTVS----GGSSEAGLV-CEHLLQLEGGSEVLRAKTEWRPKLTDSFRGISVIPAESS 381          
BLAST of CX671297 vs. ExPASy Swiss-Prot
Match: FATB_CUPHO (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.937e-39
Identity = 78/118 (66.10%), Postives = 96/118 (81.36%), Query Frame = -3
Query:  552 DSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKD 905
            D RKLPKL + TAD +R+GLTPRW+DLDVNQHVNNVKYIGWILES P ++LE+ +L S+TLEYRRECGR+SVL+SLTA+     G     GS + QHLLRLE+G E+++ RTEWRPK+
Sbjct:  285 DDRKLPKLDEKTADSIRKGLTPRWNDLDVNQHVNNVKYIGWILESTPPEVLETQELCSLTLEYRRECGRESVLESLTAMDPSGGG----YGS-QFQHLLRLEDGGEIVKGRTEWRPKN 397          
BLAST of CX671297 vs. ExPASy Swiss-Prot
Match: FATA_CORSA (Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) OS=Coriandrum sativum GN=FATA PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.498e-22
Identity = 59/131 (45.04%), Postives = 83/131 (63.36%), Query Frame = -3
Query:  555 RKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVS-DKDIGNLVNLG--------------SVECQHLLRLE-EGAEVLRARTEWRPK 899
            +K+ KL D  A + R GL+PR +DLD+NQHVNNV YIGW+LES P+++L +H+L ++TL+YRREC  D V+ SLT+   D+D      +G              S++  H LR+  +G E+ R RTEWR K
Sbjct:  236 KKISKLEDP-AQHSRLGLSPRRADLDMNQHVNNVAYIGWVLESIPKEVLYTHELETITLDYRRECQHDDVVDSLTSPEVDEDTAVTKIIGTNGHAAAATEARDDSLKFLHFLRVSGQGLEINRGRTEWRKK 365          
The following BLAST results are available for this feature:
BLAST of CX671297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FATB_GOSHI4.520e-4869.47Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_UMBCA1.318e-3962.79Lauroyl-acyl carrier protein thioesterase, chlorop... [more]
FATB_CINCA2.249e-3961.07Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_CUPHO2.937e-3966.10Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATA_CORSA2.498e-2245.04Oleoyl-acyl carrier protein thioesterase, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_10B12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10B12-C24-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671297 ID=CX671297; Name=CX671297; organism=Citrus sinensis; type=EST; length=907bp
TTTTTTTTCACGTGTCAAGAGGCTGGCATGCTAGGCATACAAGCTGGCTG
ATGAAAAAATAATTATTATTGGCAAAGTCGAAACACAAATTCGGTTGCCT
AACTCTCCTCGATTCTAACTAGAACCCTAAAACCAAACCAAAAAATATAC
ACGTCCTGTCCATCTAAAGGTCAAGGTAACATGAGGGTACCACCACCAAC
CGAAAATGTTAGGCAAAGCATAAGTGAATCTTGTCCCTCTATACAAACTC
AGTCATCCTCAGCAGCTAGCTAATTGATTCGGCAATGCAGGGAGCGAGAA
ACACAGCGCAGCAAACGCTAATTACAATGAAACTTACAACCTTTTTTTTT
TTTTAAAGAAAGAAGATGAATAAGATATGTGTATATAGATATATATTTTT
AAATATATAAGCGAACATATATAGATCCAAGAGCACACAGCATTCTACAC
GAGCAATGTGACACACGGCAGCGCGACCACCGCATCTCCGAGAAACTTGG
GTTTTAAGTGCTTTCTGCAGGGATTGGACCAACATTCCCAAAGTTGTGGG
CATCCTTTGGCCTCCATTCAGTCCTTGCTCTCAAAACTTCAGCACCTTCC
TCTAGTCGGAGCAAGTGCTGGCACTCCACACTGCCCAAGTTCACCAAATT
GCCAATGTCCTTGTCTGAGACAGCAGTCAGGGACTGCAACACACTGTCCC
TTCCGCACTCCCTCCTATACTCCAGGGTCACAGATGCCAGCTGATGACTC
TCCAAGATCTGCTGAGGAGCACTCTCTAGGATCCAGCCAATGTACTTCAC
ATTATTGACATGCTGGTTGACATCTAAATCACTCCACCTAGGAGTTAAAC
CTCTACGAACATAATCTGCAGTACTGTCGCCAAGTTTTGGTAATTTCCTG
CTATCCT
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