EY664311

Overview
NameEY664311
Unique NameEY664311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY664311 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.150e-21
Identity = 48/88 (54.55%), Postives = 59/88 (67.05%), Query Frame = 2 
Query:  395 LQEEELFRNSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGRMNGYIWLCERNGLRSIIPSPVKGLPDIERNQPL 658
            L  EE  RNSVMLDLLYVHP HPL Q+I  Y   Y  +PP +   W ID N+S  MNG++W  ERNG ++ + SPV GLP IE+N+ L
Sbjct:  598 LTVEEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHECLPWMIDPNSSQGMNGFLWFSERNGFQTRVDSPVNGLPCIEQNRAL 685

HSP 2 Score: 23.8682 bits (50), Expect = 1.150e-21
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = 1 
Query:  655 INXTYLNRQKHRHMPDLPRAQPYP 726
            +N TYL   KH H+ + PR    P
Sbjct:  685 LNVTYLCPAKHSHISEPPRGAIIP 708
The following BLAST results are available for this feature:
BLAST of EY664311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
XRN4_ARATH1.150e-2154.555'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-065-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664311 ID=EY664311; Name=EY664311; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGCAAGTTGCCATTTATTGATGAGAAGTTGTTGCTGCGTCA
AACAAAGAAGCTTGAGGTGTTTTTAACGGTATGGAATTTGTTATGATTCT
GTAGTGTTACTCTTGAATCCGCTGGCCTTGGGTCCTAGTGAGGGGTAATT
AGGGATTTGGCATTTGGATACTTGTCTCTCAGAGAGAGAATATAAAAGAA
AAAGCATTGCCTTTATTCTTGGTTTCTGTTTTCTTCGATTTATATTTCTA
ATTTCTTAACCCGCAGTAGTAGGTTGCATTGCTTTGATTTATTGGGAATT
TCTACAGTTCAAAAAGTTTTGGGCCATGATTTTGGCAGGAAGGTCCTTTT
CTTCTATGTTTTTCAATGCTACATATGGTAATTCTCAATTTAATTTGCAG
GAAGAAGAGCTGTTTCGAAATAGTGTGATGCTTGATTTACTTTATGTTCA
TCCACAGCATCCTTTGTATCAACAGATTACTTTGTACTGCCAGCTCTACC
ATCAGTTGCCTCCTCAAGACAGATTCGCTTGGGAAATTGATGTAAATGCC
AGTGGGCGAATGAATGGATACATTTGGTTATGTGAGAGAAATGGTTTGAG
AAGCATCATCCCTTCACCTGTCAAGGGGCTGCCAGACATTGAGCGTAACC
AACCATTAATGNTACGTATCTTAACCGTCAAAAACATAGACACATGCCAG
ACCTGCCAAGGGCGCAACCATACCCTGCTAGACCCTAAAACCATAGACAT
AAACCATGTCCTACTCTTTGCATGAANACAATANNCCGCGCCACCAGGCA
AGGAGAGCCCCANTTGCCTGGAACCTANCTTGCCCTGTTTTGGGAAAACA
CCCATCCTCTTTCAAAATACCTTATTTTAAACCCAGGGTCTTCCGATATT
CCA
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