CX306607

Overview
NameCX306607
Unique NameCX306607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.987e-42
Identity = 78/142 (54.93%), Postives = 103/142 (72.54%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENEKHKALVRAGKATKKVLKRDPGTPNPAKFVTGSESQNIAP 738
            TRDLF +PFRK+G + LSTYL  +K+GDYVD+K N +IHKGMPHKFYHG+TGR+WNVT RA+GV++NK +GNRI++KRI+VRVEH+Q+S+C   F  R  +N++ KA  +A   T    KR P  P P   V G   + + P
Sbjct:   11 TRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETIST-KRQPKGPKPGFMVEGMTLETVTP 151          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.880e-41
Identity = 78/142 (54.93%), Postives = 102/142 (71.83%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENEKHKALVRAGKATKKVLKRDPGTPNPAKFVTGSESQNIAP 738
            TRDLF +PFRK+G + LSTYL  +K+GDYVD+K N +IHKGMPHKFYHG+TGR+WNVT RA+GV++NK +GNRI++KRI+VRVEH+Q+S+C   F  R  +N+  KA  +A   T    KR P  P P   V G   + + P
Sbjct:   11 TRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETIST-KRQPKGPKPGFMVEGMTLETVTP 151          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae GN=RPL21A PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.687e-36
Identity = 80/144 (55.56%), Postives = 101/144 (70.14%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENEKHKALVRAGKATKKVLKRDPGTPNPAKFVT--GSESQNIAP 738
            TR +FQ+ FRK G V LSTYL+ YK+GD VDIKAN SI KGMPHKFY GKTG V+NVT  ++GV INK VGNR ++KR+N+RVEHI+ SKCR  FLER+  N   +A  +A +     LKR P  P  ++ V+  G+  Q +AP
Sbjct:   11 TRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKA-QGVAVQLKRQPAQPRESRIVSTEGNVPQTLAP 153          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae GN=RPL21B PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.878e-36
Identity = 79/144 (54.86%), Postives = 101/144 (70.14%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENEKHKALVRAGKATKKVLKRDPGTPNPAKFVT--GSESQNIAP 738
            TR +FQ+ FRK G V +STYL+ YK+GD VDIKAN SI KGMPHKFY GKTG V+NVT  ++GV INK VGNR ++KR+N+RVEHI+ SKCR  FLER+  N   +A  +A +     LKR P  P  ++ V+  G+  Q +AP
Sbjct:   11 TRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKA-QGVAVQLKRQPAQPRESRIVSTEGNVPQTLAP 153          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.436e-35
Identity = 71/132 (53.79%), Postives = 92/132 (69.70%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENEKHKALVRAGKATKKVLKRDPGTPNPAKFV 708
            TR LF + F+  GPV LSTYL N+KIG+YVD+  N ++HKGMP K+YHG+TG VWNVT RAIGV+INK V +RI+KKRI+VR++H++KS CR  FL+R+ EN+K K      K      KR P  P     +
Sbjct:   11 TRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGRTGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAHVAKLPVPSTKRLPVLPKAGAII 142          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21B_SCHPO (60S ribosomal protein L21-B OS=Schizosaccharomyces pombe GN=rpl21b PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.156e-35
Identity = 73/141 (51.77%), Postives = 98/141 (69.50%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENE-KHKALVRAGKATKKVLKRDPGTPNPAKFVTGSESQNI 732
            TR  FQ+ FR+ G ++LSTYL+ YK+GD VDIK N ++ KGMPHK+YHGKTG V+NVT  ++GV I K VGNR M+KR+NVR+EH++ SKCR  FL+R+  NE K K     GK  +  L+R P  P  A FV+   ++ +
Sbjct:   11 TRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQ--LRRQPAPPATAHFVSTENNEPV 149          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21A_SCHPO (60S ribosomal protein L21-A OS=Schizosaccharomyces pombe GN=rpl21a PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.156e-35
Identity = 73/141 (51.77%), Postives = 98/141 (69.50%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENE-KHKALVRAGKATKKVLKRDPGTPNPAKFVTGSESQNI 732
            TR  FQ+ FR+ G ++LSTYL+ YK+GD VDIK N ++ KGMPHK+YHGKTG V+NVT  ++GV I K VGNR M+KR+NVR+EH++ SKCR  FL+R+  NE K K     GK  +  L+R P  P  A FV+   ++ +
Sbjct:   11 TRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQ--LRRQPAPPAKAHFVSTENNEPV 149          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.024e-33
Identity = 72/133 (54.14%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENEKHKALVRAGKATKKV-LKRDPGTPNPAKFV 708
            TR LF + FR  G ++ +T+L  +++GDYVDIKA  ++HKGMPHKFYHG+TGRVWNVTPRA+GV INK VG RI+ K+I+VR EH++ S      L+R+ EN+  KA+V A KA K V ++R+P  P    FV
Sbjct:   11 TRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENK--KAVVEAKKAGKWVDVRRNPAAPKDGFFV 141          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_HUMAN (60S ribosomal protein L21 OS=Homo sapiens GN=RPL21 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.978e-33
Identity = 74/144 (51.39%), Postives = 95/144 (65.97%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENEKHKALVRAGKATKKVLKRDPGTPNPAKFV--TGSESQNIAP 738
            TR +F +PFRK G V L+TY+  YK GD VDIK   ++ KGMPHK YHGKTGRV+NVT  A+G+ +NK V  +I+ KRINVR+EHI+ SK R  FL+R+ EN++ K   +  K T   LKR P  P  A FV   G E + + P
Sbjct:   11 TRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKE-KGTWVQLKRQPAPPREAHFVRTNGKEPELLEP 153          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_CHILA (60S ribosomal protein L21 OS=Chinchilla lanigera GN=RPL21 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.634e-33
Identity = 73/144 (50.69%), Postives = 95/144 (65.97%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENEKHKALVRAGKATKKVLKRDPGTPNPAKFV--TGSESQNIAP 738
            TR +F +P+RK G V L+TY+  YK GD VDIK   ++ KGMPHK YHGKTGRV+NVT  A+G+ +NK V  +I+ KRINVR+EHI+ SK R  FL+R+ EN++ K   +  K T   LKR P  P  A FV   G E + + P
Sbjct:   11 TRYMFSRPYRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKE-KGTWVQLKRQPAPPREAHFVRTNGKEPELLEP 153          
The following BLAST results are available for this feature:
BLAST of CX306607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL211_ARATH5.987e-4254.9360S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
RL212_ARATH3.880e-4154.9360S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
RL21A_YEAST1.687e-3655.5660S ribosomal protein L21-A OS=Saccharomyces cerev... [more]
RL21B_YEAST2.878e-3654.8660S ribosomal protein L21-B OS=Saccharomyces cerev... [more]
RL21_CYAPA2.436e-3553.7960S ribosomal protein L21 OS=Cyanophora paradoxa G... [more]
RL21B_SCHPO4.156e-3551.7760S ribosomal protein L21-B OS=Schizosaccharomyces... [more]
RL21A_SCHPO4.156e-3551.7760S ribosomal protein L21-A OS=Schizosaccharomyces... [more]
RL21_DICDI1.024e-3354.1460S ribosomal protein L21 OS=Dictyostelium discoid... [more]
RL21_HUMAN2.978e-3351.3960S ribosomal protein L21 OS=Homo sapiens GN=RPL21... [more]
RL21_CHILA6.634e-3350.6960S ribosomal protein L21 OS=Chinchilla lanigera G... [more]

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Properties
Property NameValue
Genbank descriptionC08028D03SK PhyRootSw1 Citrus sinensis cDNA clone C08028D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306607 ID=CX306607; Name=CX306607; organism=Citrus sinensis; type=EST; length=742bp
GAGGAGTTGCTCTAAGACCACAAGAAGTACAGATCCAAGCGAACAAGAAA
CAGTGACAACACTGAAGGATACAGATAACGGAAGTCTGCATTTTTAGTTG
TTGTTTCATTTGCTTGGTATTCTAATTCAGAAACTTCTGTGTGGGAAAAT
AGAAAAGGTTAGCAGAGGCTTGTTGACAATGTTTTGAACAAACATTGGTT
CTAGAAATAAAGAATGATGAGGTTCTGATTTGCGAAAACAAAAAAAAAAA
AAAAAAANNNNNNNNNNNNNNNNNNNNNGGCACGAGGGCGATCCGGAGGT
TACCGAAGTAATACTAGAGATTTGTTTCAACAACCCTTTAGAAAAAGAGG
ACCCGTTAAATTATCAACTTACTTAGAAAACTATAAAATTGGAGACTATG
TTGATATTAAAGCTAACCCCTCCATTCACAAGGGTATGCCTCACAAATTT
TACCATGGTAAAACTGGTCGAGTTTGGAATGTAACTCCTCGAGCAATTGG
TGTTCAAATCAATAAACCTGTCGGAAACAGAATCATGAAAAAGCGAATTA
ATGTTAGAGTTGAACATATTCAAAAATCCAAGTGCCGAACTCACTTCTTA
GAACGACTTGTCGAAAACGAAAAGCACAAAGCTTTGGTTCGAGCTGGAAA
AGCCACCAAAAAAGTTCTCAAACGAGATCCTGGAACACCTAATCCCGCTA
AATTTGTTACAGGAAGCGAATCTCAAAATATTGCTCCCGCTC
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