CX303411

Overview
NameCX303411
Unique NameCX303411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length199
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_MAGGR (40S ribosomal protein S29 OS=Magnaporthe grisea GN=RPS29 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.160e-19
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHKYR 172
            M HD +WNS P+TYGKG+R CRVC H+AGLIRKY LD+CRQCF++ + DIGF K+R
Sbjct:    1 MSHDSVWNSRPRTYGKGARSCRVCTHRAGLIRKYGLDICRQCFREKAADIGFVKHR 56          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_ASHGO (40S ribosomal protein S29 OS=Ashbya gossypii GN=RPS29 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.978e-19
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHKYR 172
            M H+ +W SHP+ YGKGSRQCRVCA  +GLIRKY L++CRQCF++ + DIGFHKYR
Sbjct:    1 MAHENVWFSHPRNYGKGSRQCRVCASHSGLIRKYGLNICRQCFREKANDIGFHKYR 56          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_NEUCR (40S ribosomal protein S29 OS=Neurospora crassa GN=rps-29 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.517e-19
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHKYR 172
            M H+ +WNS P+TYGKGSR CRVC H AGLIRKY L++CRQCF++ + DIGF K+R
Sbjct:    1 MSHESVWNSRPRTYGKGSRSCRVCTHSAGLIRKYGLNICRQCFREKANDIGFTKHR 56          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_GRIJA (40S ribosomal protein S29 OS=Griffithsia japonica GN=RPS29 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.675e-18
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHKYR 172
            MGH  +W SHP+ YGKGSR C++C +K GLIRKY +++CRQCF++Y+ DIGF KYR
Sbjct:    1 MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIKYR 56          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29B_YEAST (40S ribosomal protein S29-B OS=Saccharomyces cerevisiae GN=RPS29B PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.187e-18
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHKYR 172
            M H+ +W SHP+ +GKGSRQCRVC+   GL+RKY L++CRQCF++ + DIGFHKYR
Sbjct:    1 MAHENVWFSHPRRFGKGSRQCRVCSSHTGLVRKYDLNICRQCFREKANDIGFHKYR 56          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_CANGA (40S ribosomal protein S29 OS=Candida glabrata GN=RPS29 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.085e-17
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHKYR 172
            M H+ +W SHP+ +GKGSRQCRVC+   GLIRKY L++CRQCF++ + DIGF+KYR
Sbjct:    1 MAHENVWFSHPRRFGKGSRQCRVCSSHTGLIRKYDLNICRQCFRERASDIGFNKYR 56          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29A_YEAST (40S ribosomal protein S29-A OS=Saccharomyces cerevisiae GN=RPS29A PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.418e-17
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHKYR 172
            M H+ +W SHP+ YGKGSRQCRVC+   GLIRKY L++CRQCF++ + DIGF+K+R
Sbjct:    1 MAHENVWFSHPRRYGKGSRQCRVCSSHTGLIRKYGLNICRQCFREKANDIGFNKFR 56          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_DEBHA (40S ribosomal protein S29 OS=Debaryomyces hansenii GN=RPS29 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.851e-17
Identity = 34/56 (60.71%), Postives = 47/56 (83.93%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHKYR 172
            M H+ +W SHP+ +GKGSRQCRVC+  +GLIRKY L++CRQCF++ + DIGF+K+R
Sbjct:    1 MAHESVWFSHPRNFGKGSRQCRVCSSHSGLIRKYDLNICRQCFRERASDIGFNKFR 56          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_IXOSC (40S ribosomal protein S29 OS=Ixodes scapularis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.158e-17
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MGH+ +W SHP+ YG GSR CRVCA+  GLIRKY L++CR+CF+QY+ DIGF K
Sbjct:    1 MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFRQYAADIGFKK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_SCALT (40S ribosomal protein S29 OS=Scarabaeus laticollis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.387e-17
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MGH  +W SHP+ YG+GSR CR C+++ GLIRKY L++CRQCF++Y+ DIGF K
Sbjct:    1 MGHQNIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54          
The following BLAST results are available for this feature:
BLAST of CX303411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_MAGGR1.160e-1967.8640S ribosomal protein S29 OS=Magnaporthe grisea GN... [more]
RS29_ASHGO1.978e-1967.8640S ribosomal protein S29 OS=Ashbya gossypii GN=RP... [more]
RS29_NEUCR7.517e-1966.0740S ribosomal protein S29 OS=Neurospora crassa GN=... [more]
RS29_GRIJA1.675e-1862.5040S ribosomal protein S29 OS=Griffithsia japonica ... [more]
RS29B_YEAST2.187e-1862.5040S ribosomal protein S29-B OS=Saccharomyces cerev... [more]
RS29_CANGA1.085e-1762.5040S ribosomal protein S29 OS=Candida glabrata GN=R... [more]
RS29A_YEAST1.418e-1762.5040S ribosomal protein S29-A OS=Saccharomyces cerev... [more]
RS29_DEBHA1.851e-1760.7140S ribosomal protein S29 OS=Debaryomyces hansenii... [more]
RS29_IXOSC3.158e-1764.8140S ribosomal protein S29 OS=Ixodes scapularis GN=... [more]
RS29_SCALT5.387e-1761.1140S ribosomal protein S29 OS=Scarabaeus laticollis... [more]

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Properties
Property NameValue
Genbank descriptionC08030H11SK PhyRootSw1 Citrus sinensis cDNA clone C08030H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303411 ID=CX303411; Name=CX303411; organism=Citrus sinensis; type=EST; length=199bp
CAACATGGGCCACGATCAGCTTTGGAACTCCCACCCCAAGACCTACGGAA
AGGGCTCCCGCCAGTGCCGTGTCTGCGCCCACAAGGCCGGTCTCATTCGC
AAGTACCACCTCGATCTTTGCAGGCAGTGCTTCAAGCAGTACTCTGGTGA
CATTGGTTTCCACAAGTACCGCTAATTGTTCCATCTACGTTTCAATTTG
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