CX303392

Overview
NameCX303392
Unique NameCX303392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX303392 vs. ExPASy Swiss-Prot
Match: FBW4_ARATH (F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana GN=At3g52030 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.587e-11
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 3 
Query:    6 VLSRCVMDIGXXXXXXNKVSGVIERNEGRRLSAGCCIDRIPGGMRPPITCLAVGMKKVVTTHNSKYIRLWKFNYS 230
            VLSR +MD             VIE+  G+R+S    ID+I   +RP I+C+A+GMKK+VT HN K I +WKFN S
Sbjct:  380 VLSRVIMDDKFSTTSTRNNQVVIEKRRGKRVSQDMEIDKIERKVRPQISCIAMGMKKMVTAHNGKCISVWKFNLS 454
The following BLAST results are available for this feature:
BLAST of CX303392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBW4_ARATH1.587e-1146.67F-box/WD-40 repeat-containing protein At3g52030 OS... [more]
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Properties
Property NameValue
Genbank descriptionC08030G04SK PhyRootSw1 Citrus sinensis cDNA clone C08030G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303392 ID=CX303392; Name=CX303392; organism=Citrus sinensis; type=EST; length=472bp
GAGAAGTTCTATCAAGATGTGTAATGGACATTGGCTCAGCATCAAGTTCC
TCCAATAAAGTCTCTGGAGTAATTGAAAGAAATGAAGGAAGAAGGCTATC
GGCAGGTTGCTGTATTGATCGAATTCCGGGGGGCATGCGACCTCCCATTA
CGTGTTTAGCTGTTGGGATGAAAAAGGTTGTCACTACACACAATAGCAAG
TACATCAGATTATGGAAATTTAACTACTCCGACAAATACCTTTGACTTTT
GCCTGAATTCAACTTAAAATGTACTTGGGCCGTGGCCCTGTTCCATCAAT
TTCTTCCTTGTACACTAATACGAACTTTCCTGTTTTTATAGTCTATAGCT
TAGTGCCCAAGGCTATGATTGAATTGAGGTGTGTAATTACAGTGTTTGTA
AAGTTGAGTAGAATTACAGCAATTGCAAACACTCTTCAAAAAANAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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