CX303388

Overview
NameCX303388
Unique NameCX303388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX303388_ssr612 microsatellite CX303388_ssr612:612..621. BLAST: Citrus ESTs to Prunus persica proteins V1
CX303388_ssr624 microsatellite CX303388_ssr624:624..635. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 4.630e-42
Identity = 85/157 (54.14%), Postives = 110/157 (70.06%), Query Frame = 3
Query:   57 MGDINDYDF-SGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524
            M D  ++ F S  DAGAS  Y ++AG +R  G+IVIK+ PCKV  VSTSKTGKHGHAKC+F AIDIF GKK EDI+PS+HN  +P V R E  L+DIS D F SL+  DGN ++D++LP   +    +I+  FE+GK   VT+ SAMG +QI A+K+
Sbjct:    1 MSDSEEHHFESKADAGASKTYPQQAGTVRKNGFIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPT-DETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKD 156          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A1_ARATH (Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana GN=At1g13950 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.347e-41
Identity = 81/151 (53.64%), Postives = 111/151 (73.51%), Query Frame = 3
Query:   72 DYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524
            ++ F  +DAGAS  Y ++AG IR  GYIVIK+ PCKV  VSTSKTGKHGHAKC+F AIDIFT KK EDI+PS+HN  VP V R +  L+DIS D + SL+ ++G+ ++D+KLP   D   ++I++ F+ GK   V+++SAMG +QI A+K+
Sbjct:    5 EHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPN-DDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKD 154          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.759e-41
Identity = 84/147 (57.14%), Postives = 106/147 (72.11%), Query Frame = 3
Query:   84 SGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524
            S  DAGAS  Y ++AG IR  G+IVIK  PCKV  VSTSKTGKHGHAKC+F AIDIFTGKK EDI+PS+HN  VP V R +  L+DIS D F SL+ E+GN ++D++LP   DN   +I+  F  GK   V+++SAMG +QI A+K+
Sbjct:   10 SKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPT-DDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKD 155          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.298e-41
Identity = 84/156 (53.85%), Postives = 109/156 (69.87%), Query Frame = 3
Query:   57 MGDINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524
            M D   +  S  DAGAS  Y ++AG IR GG+IVIK+ PCKV  VSTSKTGKHGHAKC+F AIDIFTGKK EDI+PS+HN  VP V R +  L+DIS D F SL+ E+GN ++D++LP   D    +++  F  GK   ++++SAMG +QI  IK+
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPT-DDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKD 155          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.001e-41
Identity = 84/156 (53.85%), Postives = 109/156 (69.87%), Query Frame = 3
Query:   57 MGDINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524
            M D   +  S  DAGAS  Y ++AG IR  GYIVIK  PCKV  VSTSKTGKHGHAKC+F AIDIF GKK EDI+PS+HN  VP V R +  L+DIS D F SL+ E GN ++D++LP   ++  ++++  F+ GK   V+++SAMG +QI AIK+
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPT-DESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKD 155          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.001e-41
Identity = 83/156 (53.21%), Postives = 109/156 (69.87%), Query Frame = 3
Query:   57 MGDINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524
            M D   +  S  DAGAS  + ++AG IR  GYIVIK  PCKV  VSTSKTGKHGHAKC+F AIDIF GKK EDI+PS+HN  VP V R +  L+DIS D F SL+ E GN ++D++LP   +N  ++++  F+ GK   V+++SAMG +QI A+K+
Sbjct:    1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPT-DENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKD 155          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.001e-41
Identity = 84/156 (53.85%), Postives = 108/156 (69.23%), Query Frame = 3
Query:   57 MGDINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524
            M D   +  S  DAGAS  Y ++AG IR  GYIVIK  PCKV  VSTSKTGKHGHAKC+F AIDIF GKK EDI+PS+HN  VP V R +  L+DIS D F SL+ E+GN ++D++LP   D    +++  FE GK   ++++SAMG +QI A+K+
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPT-DDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKD 155          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A3_ARATH (Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana GN=At1g69410 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.919e-41
Identity = 81/152 (53.29%), Postives = 110/152 (72.37%), Query Frame = 3
Query:   69 NDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524
            +++ F  +DAGAS  Y ++AG IR GG+IVIK  PCKV  VSTSKTGKHGHAKC+F AIDIFT KK EDI+PS+HN  VP V R +  L+DIS D F SL+ ++G+ ++D+KLP   +    +++  FE GK   V+++SAMG +Q+ A+KE
Sbjct:    4 DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPT-DEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKE 154          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.686e-41
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 3
Query:   84 SGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524
            S  DAGAS  Y ++AG IR  GYIVIK  PCKV  VSTSKTGKHGHAKC+F AIDIFTGKK EDI+PS+HN  VP V R +  L+DIS D F SL+ ++GN ++D++LP   D+   +I+  F  GK   V+++SAMG +QI A+K+
Sbjct:   10 SKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPT-DDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKD 155          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.686e-41
Identity = 85/156 (54.49%), Postives = 108/156 (69.23%), Query Frame = 3
Query:   57 MGDINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524
            M D   +  S  DAGAS  Y ++AG IR  G+IVIK+ PCKV  VSTSKTGKHGHAKC+F AIDIFTGKK EDI+PS+HN  VP V R +  L+DIS D F SL+ E+GN ++D++LP   DN    I+  F  GK   ++++SAMG +QI  IK+
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPT-DDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKD 155          
The following BLAST results are available for this feature:
BLAST of CX303388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
IF5A_MAIZE4.630e-4254.14Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A1_ARATH1.347e-4153.64Eukaryotic translation initiation factor 5A-1 OS=A... [more]
IF5A2_NICPL1.759e-4157.14Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A1_SOLLC2.298e-4153.85Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A3_SOLTU3.001e-4153.85Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A2_SOLLC3.001e-4153.21Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A1_SOLTU3.001e-4153.85Eukaryotic translation initiation factor 5A-1/2 OS... [more]
IF5A3_ARATH3.919e-4153.29Eukaryotic translation initiation factor 5A-3 OS=A... [more]
IF5A4_SOLTU6.686e-4156.46Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_TOBAC6.686e-4154.49Eukaryotic translation initiation factor 5A-1 OS=N... [more]

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Properties
Property NameValue
Genbank descriptionC08030F12SK PhyRootSw1 Citrus sinensis cDNA clone C08030F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303388 ID=CX303388; Name=CX303388; organism=Citrus sinensis; type=EST; length=646bp
GAGGCCTTATCCACGCAGTAGATCTTTGTTTTTCTTTGTATTTTTGATAA
TCAAGAATGGGAGATATTAATGATTATGATTTCTCTGGAACTGACGCTGG
TGCCTCCCACGTCTATAACGAAGAAGCTGGTCAAATCCGTGTCGGAGGAT
ACATTGTTATCAAGGATCATCCTTGCAAGGTTACCGCTGTCTCCACCTCC
AAGACTGGAAAGCACGGTCACGCCAAGTGCAACTTCACTGCTATTGATAT
CTTCACCGGAAAGAAGTACGAAGATATCATCCCTTCCACCCACAACACCC
ACGTTCCTTTCGTTACCCGCAAAGAATTATCCTTGGTTGATATTTCTGGT
GATGATTTTTGCTCATTAATGGACGAAGATGGAAATGTCCGTGAAGATGT
CAAGCTCCCTGAGTACCCAGATAACTTTGGTCGTGAAATCCGCACTGCCT
TCGAAACTGGAAAGTCTCACTCTGTCACTCTTGTCTCTGCTATGGGTCAT
GATCAAATCGTCGCCATCAAGGAAGAGCAAGAGTCCAAGAATTAAATTAA
CTTACATAAATTTCCTGGTTTCGTCATTGTTCTAAAATACTTGGTGAAAT
CAGCGTGGATAATATATATATACAATAATAATAATTAATAAATATA
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