CX303388
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 4.630e-42 Identity = 85/157 (54.14%), Postives = 110/157 (70.06%), Query Frame = 3 Query: 57 MGDINDYDF-SGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524 M D ++ F S DAGAS Y ++AG +R G+IVIK+ PCKV VSTSKTGKHGHAKC+F AIDIF GKK EDI+PS+HN +P V R E L+DIS D F SL+ DGN ++D++LP + +I+ FE+GK VT+ SAMG +QI A+K+ Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTVRKNGFIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPT-DETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKD 156
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A1_ARATH (Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana GN=At1g13950 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.347e-41 Identity = 81/151 (53.64%), Postives = 111/151 (73.51%), Query Frame = 3 Query: 72 DYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524 ++ F +DAGAS Y ++AG IR GYIVIK+ PCKV VSTSKTGKHGHAKC+F AIDIFT KK EDI+PS+HN VP V R + L+DIS D + SL+ ++G+ ++D+KLP D ++I++ F+ GK V+++SAMG +QI A+K+ Sbjct: 5 EHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPN-DDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKD 154
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.759e-41 Identity = 84/147 (57.14%), Postives = 106/147 (72.11%), Query Frame = 3 Query: 84 SGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524 S DAGAS Y ++AG IR G+IVIK PCKV VSTSKTGKHGHAKC+F AIDIFTGKK EDI+PS+HN VP V R + L+DIS D F SL+ E+GN ++D++LP DN +I+ F GK V+++SAMG +QI A+K+ Sbjct: 10 SKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPT-DDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKD 155
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.298e-41 Identity = 84/156 (53.85%), Postives = 109/156 (69.87%), Query Frame = 3 Query: 57 MGDINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524 M D + S DAGAS Y ++AG IR GG+IVIK+ PCKV VSTSKTGKHGHAKC+F AIDIFTGKK EDI+PS+HN VP V R + L+DIS D F SL+ E+GN ++D++LP D +++ F GK ++++SAMG +QI IK+ Sbjct: 1 MSDEEHHFESKADAGASKTYPQQAGTIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPT-DDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKD 155
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.001e-41 Identity = 84/156 (53.85%), Postives = 109/156 (69.87%), Query Frame = 3 Query: 57 MGDINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524 M D + S DAGAS Y ++AG IR GYIVIK PCKV VSTSKTGKHGHAKC+F AIDIF GKK EDI+PS+HN VP V R + L+DIS D F SL+ E GN ++D++LP ++ ++++ F+ GK V+++SAMG +QI AIK+ Sbjct: 1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPT-DESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKD 155
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.001e-41 Identity = 83/156 (53.21%), Postives = 109/156 (69.87%), Query Frame = 3 Query: 57 MGDINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524 M D + S DAGAS + ++AG IR GYIVIK PCKV VSTSKTGKHGHAKC+F AIDIF GKK EDI+PS+HN VP V R + L+DIS D F SL+ E GN ++D++LP +N ++++ F+ GK V+++SAMG +QI A+K+ Sbjct: 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPT-DENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKD 155
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.001e-41 Identity = 84/156 (53.85%), Postives = 108/156 (69.23%), Query Frame = 3 Query: 57 MGDINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524 M D + S DAGAS Y ++AG IR GYIVIK PCKV VSTSKTGKHGHAKC+F AIDIF GKK EDI+PS+HN VP V R + L+DIS D F SL+ E+GN ++D++LP D +++ FE GK ++++SAMG +QI A+K+ Sbjct: 1 MSDEEHHFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPT-DDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKD 155
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A3_ARATH (Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana GN=At1g69410 PE=2 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 3.919e-41 Identity = 81/152 (53.29%), Postives = 110/152 (72.37%), Query Frame = 3 Query: 69 NDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524 +++ F +DAGAS Y ++AG IR GG+IVIK PCKV VSTSKTGKHGHAKC+F AIDIFT KK EDI+PS+HN VP V R + L+DIS D F SL+ ++G+ ++D+KLP + +++ FE GK V+++SAMG +Q+ A+KE Sbjct: 4 DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPT-DEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKE 154
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 6.686e-41 Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 3 Query: 84 SGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524 S DAGAS Y ++AG IR GYIVIK PCKV VSTSKTGKHGHAKC+F AIDIFTGKK EDI+PS+HN VP V R + L+DIS D F SL+ ++GN ++D++LP D+ +I+ F GK V+++SAMG +QI A+K+ Sbjct: 10 SKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPT-DDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKD 155
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 6.686e-41 Identity = 85/156 (54.49%), Postives = 108/156 (69.23%), Query Frame = 3 Query: 57 MGDINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524 M D + S DAGAS Y ++AG IR G+IVIK+ PCKV VSTSKTGKHGHAKC+F AIDIFTGKK EDI+PS+HN VP V R + L+DIS D F SL+ E+GN ++D++LP DN I+ F GK ++++SAMG +QI IK+ Sbjct: 1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPT-DDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKD 155 The following BLAST results are available for this feature:
BLAST of CX303388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CX303388 ID=CX303388; Name=CX303388; organism=Citrus sinensis; type=EST; length=646bpback to top |