FC871734

Overview
NameFC871734
Unique NameFC871734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871734_ssr164 microsatellite FC871734_ssr164:164..175. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2834 contig Csv1_Contig2834:23..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871734 vs. ExPASy Swiss-Prot
Match: UBTD1_DANRE (Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18
Identity = 49/111 (44.14%), Postives = 60/111 (54.05%), Query Frame = 3 
Query:  216 QSKADGTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWD----XXXXXXXXXXXXXXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 533
            Q K  G  + ++K KP WK   P+T+ QL   RDEFWDTAP + GRKEIWD                   IVD A + +    LT CYDE G +Y+LP Y L+ P NLI E
Sbjct:   20 QRKRGGRNEPLKKDKPKWKSDYPMTEGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAVALECSDHELAQAIVDGANITLPHGSLTECYDELGNRYQLPVYCLAPPVNLISE 130
[Close]
BLAST of FC871734 vs. ExPASy Swiss-Prot
Match: UBTD1_XENTR (Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 48/111 (43.24%), Postives = 59/111 (53.15%), Query Frame = 3 
Query:  216 QSKADGTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWD----XXXXXXXXXXXXXXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 533
            Q K  G  + ++K +P WK   P+T  QL   RDEFWDTAP + GRKEIWD                   IVD A + +    LT CYDE G +Y+LP Y L+ P NLI E
Sbjct:   23 QRKRAGRNEPLKKERPRWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAFAVEANDHELAQAIVDGASITLPHGSLTECYDELGTRYQLPVYCLAPPVNLIME 133
[Close]
BLAST of FC871734 vs. ExPASy Swiss-Prot
Match: UBTD2_DANRE (Ubiquitin domain-containing protein 2 OS=Danio rerio GN=ubtd2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 46/101 (45.54%), Postives = 54/101 (53.47%), Query Frame = 3 
Query:  243 KIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWD----XXXXXXXXXXXXXXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 533
            K  KPK WK   P+T  QL   RDEFWDTAP + GRKEIWD                   I+D A + +    LT CYDE G +Y+LP Y LS P N+I E
Sbjct:   33 KREKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAQAFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLSPPVNMIEE 132
[Close]
BLAST of FC871734 vs. ExPASy Swiss-Prot
Match: UBTD2_MOUSE (Ubiquitin domain-containing protein 2 OS=Mus musculus GN=Ubtd2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 45/106 (42.45%), Postives = 57/106 (53.77%), Query Frame = 3 
Query:  231 GTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWD----XXXXXXXXXXXXXXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 533
            G  + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIWD                   I+D A + +    LT CYDE G +Y+LP Y L+ P N+I E
Sbjct:   27 GRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEE 132
[Close]
BLAST of FC871734 vs. ExPASy Swiss-Prot
Match: UBTD2_HUMAN (Ubiquitin domain-containing protein 2 OS=Homo sapiens GN=UBTD2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 45/106 (42.45%), Postives = 57/106 (53.77%), Query Frame = 3 
Query:  231 GTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWD----XXXXXXXXXXXXXXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 533
            G  + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIWD                   I+D A + +    LT CYDE G +Y+LP Y L+ P N+I E
Sbjct:   27 GRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEE 132
[Close]
BLAST of FC871734 vs. ExPASy Swiss-Prot
Match: UBTD2_BOVIN (Ubiquitin domain-containing protein 2 OS=Bos taurus GN=UBTD2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 45/106 (42.45%), Postives = 57/106 (53.77%), Query Frame = 3 
Query:  231 GTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWD----XXXXXXXXXXXXXXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 533
            G  + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIWD                   I+D A + +    LT CYDE G +Y+LP Y L+ P N+I E
Sbjct:   27 GRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEE 132
[Close]
BLAST of FC871734 vs. ExPASy Swiss-Prot
Match: UBTD1_XENLA (Ubiquitin domain-containing protein 1 OS=Xenopus laevis GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 45/106 (42.45%), Postives = 57/106 (53.77%), Query Frame = 3 
Query:  231 GTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWD----XXXXXXXXXXXXXXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 533
            G  + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIWD                   I+D A + +    LT CYDE G +Y+LP Y L+ P N+I E
Sbjct:   27 GRNQPLKKDKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLAPPINMIEE 132
[Close]
BLAST of FC871734 vs. ExPASy Swiss-Prot
Match: UBTD1_RAT (Ubiquitin domain-containing protein 1 OS=Rattus norvegicus GN=Ubtd1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 44/109 (40.37%), Postives = 56/109 (51.38%), Query Frame = 3 
Query:  222 KADGTVKKIRKPK-PWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWD----XXXXXXXXXXXXXXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 533
            K  G  + ++K +  WK   P+T  QL   RDEFWDTAP + GRKEIWD                   I+D A + +    L  CYDE G +Y+LP Y LS P NL+ E
Sbjct:   21 KRAGRNEPLKKERLKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDELGNRYQLPIYCLSPPVNLLLE 129
[Close]
BLAST of FC871734 vs. ExPASy Swiss-Prot
Match: UBTD1_MOUSE (Ubiquitin domain-containing protein 1 OS=Mus musculus GN=Ubtd1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 44/109 (40.37%), Postives = 56/109 (51.38%), Query Frame = 3 
Query:  222 KADGTVKKIRKPK-PWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWD----XXXXXXXXXXXXXXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 533
            K  G  + ++K +  WK   P+T  QL   RDEFWDTAP + GRKEIWD                   I+D A + +    L  CYDE G +Y+LP Y LS P NL+ E
Sbjct:   21 KRAGRNEPLKKERLKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDELGNRYQLPIYCLSPPVNLLLE 129
[Close]
BLAST of FC871734 vs. ExPASy Swiss-Prot
Match: UBTD1_HUMAN (Ubiquitin domain-containing protein 1 OS=Homo sapiens GN=UBTD1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 44/109 (40.37%), Postives = 56/109 (51.38%), Query Frame = 3 
Query:  222 KADGTVKKIRKPK-PWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWD----XXXXXXXXXXXXXXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 533
            K  G  + ++K +  WK   P+T  QL   RDEFWDTAP + GRKEIWD                   I+D A + +    L  CYDE G +Y+LP Y LS P NL+ E
Sbjct:   21 KRAGRNEPLKKERLKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDELGNRYQLPIYCLSPPVNLLLE 129
The following BLAST results are available for this feature:
BLAST of FC871734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UBTD1_DANRE5.462e-1844.14Ubiquitin domain-containing protein 1 OS=Danio rer... [more]
UBTD1_XENTR1.589e-1743.24Ubiquitin domain-containing protein 1 OS=Xenopus t... [more]
UBTD2_DANRE1.757e-1645.54Ubiquitin domain-containing protein 2 OS=Danio rer... [more]
UBTD2_MOUSE2.295e-1642.45Ubiquitin domain-containing protein 2 OS=Mus muscu... [more]
UBTD2_HUMAN2.295e-1642.45Ubiquitin domain-containing protein 2 OS=Homo sapi... [more]
UBTD2_BOVIN2.295e-1642.45Ubiquitin domain-containing protein 2 OS=Bos tauru... [more]
UBTD1_XENLA2.295e-1642.45Ubiquitin domain-containing protein 1 OS=Xenopus l... [more]
UBTD1_RAT1.259e-1440.37Ubiquitin domain-containing protein 1 OS=Rattus no... [more]
UBTD1_MOUSE1.259e-1440.37Ubiquitin domain-containing protein 1 OS=Mus muscu... [more]
UBTD1_HUMAN1.259e-1440.37Ubiquitin domain-containing protein 1 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3BB11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871734 ID=FC871734; Name=FC871734; organism=Citrus sinensis; type=EST; length=703bp
CTTTTTTTTCAACTCACGGGGGAGGAACCGCAGGGACTCTCACCGGAAAA
AAATATCTCACTCACGCACTCCACGTACAAAACTGAAATAATTTTTTTAA
GAAAAAAAAAGAAATCTAAATTCAGTTGTCTTTGCATTCAATGAACCGCT
TTCTATTGTGACGGAAGAAGAAGAAGAGCGGGAAAAAAAAAAGCATGGGG
TGTGCTGGATCGTCGCAGAGCAAAGCCGACGGGACTGTGAAAAAGATTCG
AAAGCCAAAACCCTGGAAGCATCCTCAGCCAATAACAAAGTCTCAATTGA
TGCAGCTACGTGATGAGTTTTGGGACACTGCTCCTCATTATGGTGGCCGG
AAAGAGATCTGGGATGCACTACGTGCTGCTGCTGAAGCTGATCTGAGCCT
TGCGCAAGCTATTGTGGACAGTGCGGGTGTCATTGTTCAAAGCGCTGATT
TGACTATTTGCTATGATGAAAGAGGTGCAAAATATGAACTACCCAAGTAT
GTTTTGAGCGAACCGACCAACTTGATCCGAGAAGGTTAGGTTAAAGAATA
GAGAGATACTGAGTACCTTGTTTCTGCAAAGATTGATTGTAAATCATGTA
TATTTCTCTAAATCTCCTCCATACTATTTTTCGTAAAGCCATGCTCTGAT
CCTCTTTATTTGTGGACTTTTTCTTTTAAAAAAAAAAAAAAAAAAAAAAA
AAA
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