EY664190

Overview
NameEY664190
Unique NameEY664190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664190 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.811e-31
Identity = 81/144 (56.25%), Postives = 90/144 (62.50%), Query Frame = -2
Query:  164 MASCNMASAASGFSL-TPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 592
            MASCNMASAAS F + TPNVA+N N+ S++ MLFF  KN  S + RLVVR                                      V+ILR+ESYWY G GSVVA DQDP +RYPVVVRFNKVNYANVSTNNYALDEIEEVK
Sbjct:    1 MASCNMASAASNFLVATPNVASNTNT-SRTTMLFFSSKNYGSTAPRLVVRAAEEAAPPAAAATAEPAEAPVKAAKPPPIGPKRGTK--VRILRKESYWYKGTGSVVACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK 141          
BLAST of EY664190 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.939e-30
Identity = 78/146 (53.42%), Postives = 95/146 (65.07%), Query Frame = -2
Query:  164 MASCNMASAASGFSL-TPNVATNVNSGSKSNMLFFPP-KNNSSNSF-RLVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 592
            MAS +MASAASGF + TPN+AT+ N+  +++MLFF   KNN++ +F RLVVR                                      V++LR+ESYWY G+GSVVAVDQDP +RYPVVVRFNKVNYANVSTNNYALDE+EEVK
Sbjct:    1 MASSSMASAASGFMVATPNIATS-NTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPAATATAEGEAPPAKAAKPPPIGPKRGTK--VRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK 143          
BLAST of EY664190 vs. ExPASy Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.097e-23
Identity = 68/146 (46.58%), Postives = 79/146 (54.11%), Query Frame = -2
Query:  164 MASAASGFSLTPNVATNVNSGSKSN---MLFFPPKNNSSNSFRLVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK-----VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 577
            M SAA+GF LT NV   +  GS  +   + F P ++  S   RLVVR                                           VKILR+ESYWY  +GSVVAVDQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEVK
Sbjct:    3 MTSAATGFILTANVPAAIGGGSSKSTTIVSFLPMRSFGS---RLVVRAAEDTPPATASSDSSSTTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEVK 145          
BLAST of EY664190 vs. ExPASy Swiss-Prot
Match: PSAE_HORVU (Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare GN=PSAE PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 9.010e-23
Identity = 67/148 (45.27%), Postives = 75/148 (50.68%), Query Frame = -2
Query:  167 MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK------VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 592
            MAS NMASA S F L   + +  N G  S + F P   ++    +LV R                                            VKILRRESYWYNG GSVV VDQDP +RYPVVVRF KVNYA VSTNNYALDEI+EV
Sbjct:    1 MASTNMASATSRFMLAAGIPSGANGGVSSRVSFLP---SNRLGLKLVARAEEPTAAAPAEPAPAADEKPEAAVATKEPAKAKPPPRGPKRGTKVKILRRESYWYNGTGSVVTVDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEIKEV 145          
BLAST of EY664190 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.622e-22
Identity = 48/55 (87.27%), Postives = 54/55 (98.18%), Query Frame = -2
Query:  167 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 331
            V+I+R+ESYWY G+GSVVAVDQDPK+RYPVVVRFNKVNYANVSTNNYALDEI+EV
Sbjct:   70 VRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 124          
BLAST of EY664190 vs. ExPASy Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.219e-21
Identity = 66/142 (46.48%), Postives = 79/142 (55.63%), Query Frame = -2
Query:  167 MASAASGFSLTPNVATNVN-SGSKSNMLFFPPKNNSSNSFRLVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK----VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 577
            M +A++ F L  NV +    S S+S++ F P +N  S   RLVVR                                     K    VKILRRESYW+  +GSVVAVDQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEV
Sbjct:    3 MTTASTVFVLPANVTSVAGASSSRSSVSFLPMRNAGS---RLVVRAAEDPAPASSSSKDSPAAAAAPDGATATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEV 141          
BLAST of EY664190 vs. ExPASy Swiss-Prot
Match: PSAE_THEEB (Photosystem I reaction center subunit IV OS=Thermosynechococcus elongatus (strain BP-1) GN=psaE PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.794e-13
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = -2
Query:  167 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYALDEIEEV 331
            VKILR ESYWYN +G+V +VDQ P  +YPV+VRF+KVNY       + V+TNN+AL E++EV
Sbjct:    8 VKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEV 69          
BLAST of EY664190 vs. ExPASy Swiss-Prot
Match: PSAE_SYNEN (Photosystem I reaction center subunit IV OS=Synechococcus elongatus naegeli GN=psaE PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.794e-13
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = -2
Query:  167 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYALDEIEEV 331
            VKILR ESYWYN +G+V +VDQ P  +YPV+VRF+KVNY       + V+TNN+AL E++EV
Sbjct:    8 VKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEV 69          
BLAST of EY664190 vs. ExPASy Swiss-Prot
Match: PSAE_GLOVI (Photosystem I reaction center subunit IV OS=Gloeobacter violaceus GN=psaE PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.956e-13
Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = -2
Query:  164 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 331
            V+ILR+ESYWY  +G+V +VD+  K+ YPV VRF KVNY+ ++TNN+ + E+EEV+
Sbjct:    9 VRILRKESYWYREVGTVASVDKSEKTIYPVTVRFEKVNYSGINTNNFGVSELEEVE 64          
BLAST of EY664190 vs. ExPASy Swiss-Prot
Match: PSAE_CYAPA (Photosystem I reaction center subunit IV OS=Cyanophora paradoxa GN=psaE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.453e-13
Identity = 33/56 (58.93%), Postives = 47/56 (83.93%), Query Frame = -2
Query:  164 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 331
            V+ILR+ESYWY  IG+V ++DQ    +YPV+VRF KVNY+NV++NN++LDE+ EV+
Sbjct:    8 VRILRKESYWYQEIGTVASIDQSG-IKYPVIVRFEKVNYSNVNSNNFSLDEVVEVE 62          
The following BLAST results are available for this feature:
BLAST of EY664190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PSAEA_NICSY1.811e-3156.25Photosystem I reaction center subunit IV A, chloro... [more]
PSAEB_NICSY9.939e-3053.42Photosystem I reaction center subunit IV B, chloro... [more]
PSAE2_ARATH3.097e-2346.58Photosystem I reaction center subunit IV B, chloro... [more]
PSAE_HORVU9.010e-2345.27Photosystem I reaction center subunit IV, chloropl... [more]
PSAE_SPIOL2.622e-2287.27Photosystem I reaction center subunit IV, chloropl... [more]
PSAE1_ARATH2.219e-2146.48Photosystem I reaction center subunit IV A, chloro... [more]
PSAE_THEEB3.794e-1358.06Photosystem I reaction center subunit IV OS=Thermo... [more]
PSAE_SYNEN3.794e-1358.06Photosystem I reaction center subunit IV OS=Synech... [more]
PSAE_GLOVI4.956e-1355.36Photosystem I reaction center subunit IV OS=Gloeob... [more]
PSAE_CYAPA8.453e-1358.93Photosystem I reaction center subunit IV OS=Cyanop... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-H03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664190 ID=EY664190; Name=EY664190; organism=Citrus sinensis; type=EST; length=938bp
TTTTTTTTTTTAAGTTGTGAACATCTTTTCGTTGGATAAGCATAAACATG
ATGGCGAAGTAGACAGAAGAAGAATTCACTTGGAGAATAGAATACACATT
CCTGGCACACAAAGGCTTAATCTAGAGCGGGGAATAATATGCAAATCAAA
ATTACATAACTCATTTAACTTCTTCGATCTCATCCAATGCATAGTTGTTC
GTTGATACATTTGCATAGTTAACCTTGTTGAATCGAACCACAACTGGGTA
CCGACTCTTGGGATCCTGGTCAACAGCAACCACAGACCCAATGCCATTGT
ACCAGTAGGACTCCCTCCTGAGAATCTTAACCTTGGCGCCTCTCTTGGGT
CCAATCGGAGGTGGCTTGGGCTTGGGAGCTGCTTCACCTTCATCTGGGGC
AGCGGTGGTGGCAGCAGCCGGCGGGGCAGCAGCCTCCTCAGAAGCCCGTA
CAACAAGCCTGAAACTGTTGGAGCTGTTGTTCTTTGGAGGGAAAAACAGC
ATGTTGCTCTTGGAACCTGAGTTTACATTGGTCGCAACATTGGGTGTCAG
CGAAAACCCAGAAGCAGCTGATGCCATGTTGCAGCTAGCCATCACTTTTT
CTTTCTTTCTTTCGCTGTTTCTGTTTAACTGGGGAGAGAGTTGCAGAAAA
TAAAATACTCTCATACAAACCAACAGGAAAATATATAATNNTATNNATAG
AAGAAGAATCAAATTTCTTTAGCAGAAGATCATCAGGAGCAATGAGTTAC
TACAATCAGAATCAGCCCCCCTGTGGTGTACCCCCTCAGCATGTTTATNC
TNCANATGGATATNCGAAGGACGCTNATCCTCCACCGGGATATNCTNCTC
AGCATGGATACCCCCCGGNTGGTGGCTATNCTNCACACAATNATACCCTG
CNCAGGGGTGCTACCCGNCTACTCATACGCTNCTAATA
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