CV713281

Overview
NameCV713281
Unique NameCV713281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV713281 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = -1 
Query:  427 SARKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 585
            SARKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:   59 SARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CV713281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN3.070e-1979.25Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0002J11_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713281 ID=CV713281; Name=CV713281; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTCAAAAAAGCAACTTATTTATTAATAATAAAACA
TATATGCTCATCACGACCGTCCACGAAGGGATGATCTTGGCTCTTACAAA
ATGACAATCAAAAACATGTCCTAAACCCAAAAACCAGCAACCTTTCATCT
CCGCCCACAGCTTAACAATCCTCACATCACATACAATTATTAAATTATAT
GATATAAAAACATCACAGTCTTTAGTTTACTTTTAGTCAGCACCATTTTA
AAACCAAACTTTAAATAGGAAGGACACGTAATACAAATAGCATTAACAAA
ACGACAAGGACACGTTGCGAAATCCAAAACGAAACGACACTATCTACAGA
CTACAGGCAACTCATCCGGGGAGTTGGGGACCCATCACATTCATTTACAT
CGCTGGAGCGTATCATCCACTCAGTGATGATGCTTGCTCCTAGTCTCCCC
ACTGTAAAGCCAGTCATAAACAGTGGGAGAGTTAGGATGTGTGGGCTTGT
CAAAAACCTCTGCACCGATACCCCTAGTAGCAAGGTTGCTACCGGGGTGA
AACACGCTCCTCCACACGTTGTCCTTACGCGCCGACAGCGGCGTCGTCGG
CGTCACTGGCGTCAACGGGGCCCCTGG
back to top