CV713176

Overview
NameCV713176
Unique NameCV713176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV713176 vs. ExPASy Swiss-Prot
Match: RN217_XENLA (Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis GN=rnf217 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 36/89 (40.45%), Postives = 47/89 (52.81%), Query Frame = -2 
Query:  311 KAQCPSCKQWFCFQCKLKWHAGFRCEESGN----LRD-PNDIMFGQLVETMNWTRCPGCGHCVERKNGCSVVMC-RCKTQFCYKCGGKY 559
            K QCPSC+  +CF+C   WH G  C E       LR   N+I  GQ     N  +CP C   ++R  GC  + C +C T FCY+CG +Y
Sbjct:  112 KIQCPSCQFIWCFRCHAPWHEGVNCREYKKGDKLLRHWANEIEHGQ----RNAQKCPRCKVHIQRTEGCDHMTCSQCNTNFCYRCGERY 196
[Close]
BLAST of CV713176 vs. ExPASy Swiss-Prot
Match: RN217_HUMAN (Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens GN=RNF217 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = -2 
Query:  311 RNGTLKKAQCPSCKQWFCFQCKLKWHAGFRCEESGN----LRD-PNDIMFGQLVETMNWTRCPGCGHCVERKNGCSVVMC-RCKTQFCYKCGGKY 577
            R+ +  K QCP+C+  +CF+C   WH G  C+E       LR   ++I  GQ     N  +CP C   ++R  GC  + C +C T FCY+CG +Y
Sbjct:   74 RSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASEIEHGQ----RNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERY 164
The following BLAST results are available for this feature:
BLAST of CV713176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RN217_XENLA8.897e-1240.45Probable E3 ubiquitin-protein ligase RNF217 OS=Xen... [more]
RN217_HUMAN5.767e-1136.84Probable E3 ubiquitin-protein ligase RNF217 OS=Hom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0002G24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713176 ID=CV713176; Name=CV713176; organism=Citrus sinensis; type=EST; length=662bp
CAAAATGTTGTATCATTCATACAACACTACATTGTATTTGCTCACGAGTC
ATGACCACCGCAACATCTCCAATGGGAGGATATATAGCTCAATCGAATCT
CACAACAAAAAGACAGTAACAACAAAAGGGGACCTCTCGGATGCAGCTAT
AAGAAGAAGCTTAGCCTTGATCTCGGCCAGTCCTGCGATTATCTTCAGTT
CTTAAATTCATCAAAAGAGCTAGAAAAAATATAATTCCTGCGATGAATAA
AATTGGAAATGCTCTCCTGCAGTTGCATGGAAAACTTCTAAAGCATGAAC
ATCCGAGCGGATACTTTCCCCCACATTTATAACAAAATTGAGTCTTGCAT
CTGCACATGACAACAGAGCAGCCGTTCTTGCGCTCAACACAGTGGCCACA
GCCAGGGCACCTAGTCCAATTCATCGTCTCCACAAGCTGCCCAAACATAA
TATCATTTGGGTCCCTCAAGTTCCCACTTTCTTCACATCTGAAGCCAGCA
TGCCATTTCAACTTGCACTGAAAACAGAACCATTGCTTGCAACTTGGGCA
CTGAGCTTTCTTCAATGTCCCATTTCTCTCACACTCATTCACCACCAAAG
CCATGCAGTTTGTGTTGGGACAGTAGNTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTT
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